Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | KRH24811 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | KRH29812 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G239600.1 | Wheat | golgi, plasma membrane | 81.25 | 68.42 |
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| TraesCSU01G269000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| HORVU0Hr1G034610.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| HORVU6Hr1G049160.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| TraesCS5D01G196700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| AGP50750 | Barley | plastid | 84.38 | 66.67 |
| TraesCS1D01G180800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 84.38 | 66.67 |
| TraesCS1D01G070600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.81 | 65.43 |
| TraesCSU01G271100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 82.81 | 65.43 |
| TraesCSU01G174300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 82.81 | 65.43 |
| TraesCS5D01G459200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.81 | 65.43 |
| TraesCS5D01G011200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.81 | 65.43 |
| TraesCS4D01G042700.1 | Wheat | vacuole | 82.81 | 65.43 |
| Solyc09g059660.1.1 | Tomato | plastid | 81.25 | 64.2 |
| TraesCS5D01G220200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 81.25 | 64.2 |
| TraesCS6D01G021800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 81.25 | 64.2 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 79.69 | 62.96 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 81.25 | 62.65 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 57.81 | 59.68 |
| KRG94790 | Soybean | endoplasmic reticulum, extracellular, vacuole | 62.5 | 56.34 |
| CDY21188 | Canola | endoplasmic reticulum, extracellular, vacuole | 84.38 | 55.67 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 75.0 | 48.48 |
| Solyc07g021260.1.1 | Tomato | cytosol | 46.88 | 44.12 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | UniProt:A0A0R0JKX3 | EMBL:ACUP02003875 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_sf |
| InterPro:ATP_synth_csu_bac/chlpt | InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf | EnsemblPlantsGene:GLYMA_06G229000 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 |
| GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0033177 | GO:GO:0045263 |
| InterPro:IPR038662 | EnsemblPlants:KRH55079 | ProteinID:KRH55079 | ProteinID:KRH55079.1 | PFAM:PF00137 | PRINTS:PR00124 |
| PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 | SUPFAM:SSF81333 | TIGRFAMs:TIGR01260 | TMHMM:TMhelix | UniParc:UPI0006ED8161 |
Description
hypothetical protein
Coordinates
chr6:-:34838412..34838828
Molecular Weight (calculated)
6574.3 Da
IEP (calculated)
9.219
GRAVY (calculated)
0.836
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSSIGPRVG QGTAAGQAVE GIARKLEAEG KILGTLLLSL AFMEALKIYG LVVALALLFA NPFV
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.