CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00140.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33991	Rice	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU0Hr1G034610.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU0Hr1G037590.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU6Hr1G049160.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS1D01G180800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
ATCG00140.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	97.53	97.53
TraesCS7A01G363200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	91.36	91.36
Solyc10g044550.1.1	Tomato	endoplasmic reticulum, extracellular	87.65	87.65
KRH55079	Soybean	cytosol, plasma membrane, plastid	66.67	84.38
CDY21188	Canola	endoplasmic reticulum, extracellular, vacuole	97.53	81.44
KRH57995	Soybean	endoplasmic reticulum, extracellular	74.07	72.29
VIT_10s0003g04310.t01	Wine grape	cytosol	53.09	69.35
CDY40490	Canola	plastid	92.59	60.98
EER95386	Sorghum	endoplasmic reticulum, plasma membrane	74.07	60.61

Protein Annotations

MapMan:1.1.9.1.4	Gene3D:1.20.20.10	EntrezGene:4525125	EnsemblPlants:AGP50750	EnsemblPlantsGene:AGP50750	ProteinID:AGP50750
ProteinID:AGP50750.1	ProteinID:AMA20241.1	InterPro:ATP_synth_F0_csu	InterPro:ATP_synth_F0_csu_DDCD_BS	InterPro:ATP_synth_F0_csu_sf	InterPro:ATP_synth_csu_bac/chlpt
InterPro:ATPase_proteolipid_c-like_dom	InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015078
GO:GO:0015986	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0033177
GO:GO:0045263	GO:GO:0046933	InterPro:IPR038662	ENA:KC912687.1:CDS:32116..32361	HAMAP:MF_01396	PFAM:PF00137
PRINTS:PR00124	ScanProsite:PS00605	PANTHER:PTHR10031	PANTHER:PTHR10031:SF6	GO:S4Z1W4	UniProt:S4Z1W4
SUPFAM:SSF81333	TIGRFAMs:TIGR01260	TMHMM:TMhelix	UniParc:UPI00000010B1	RefSeq:YP_874648.1	SEG:seg

Description

atpHATP synthase CF0 subunit III

Coordinates

chrPt:+:32116..32361

Molecular Weight (calculated)

7975.0 Da

IEP (calculated)

4.628

GRAVY (calculated)

1.035

Length

81 amino acids

Sequence
(BLAST)

1: MNPLIAAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Best Arabidopsis Sequence Match ( ATCG00140.1 )
(BLAST)

1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Arabidopsis Description

ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.