CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33991	Rice	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
HORVU0Hr1G034610.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
HORVU0Hr1G037590.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
HORVU6Hr1G049160.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
Solyc09g059660.1.1	Tomato	plastid	60.98	92.59
TraesCS1D01G180800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
AGP50750	Barley	plastid	60.98	92.59
TraesCS5D01G196700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.98	92.59
TraesCSU01G271100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	60.16	91.36
TraesCSU01G269000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.16	91.36
TraesCS5D01G011200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.16	91.36
TraesCSU01G174300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	59.35	90.12
TraesCS1D01G070600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.35	90.12
TraesCS5D01G459200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.35	90.12
TraesCS5D01G220200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	58.54	88.89
TraesCS4D01G042700.1	Wheat	vacuole	57.72	87.65
TraesCS6D01G021800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.72	87.65
TraesCS7A01G363200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.1	85.19
CDY21188	Canola	endoplasmic reticulum, extracellular, vacuole	62.6	79.38
TraesCS1B01G239600.1	Wheat	golgi, plasma membrane	48.78	78.95
VIT_10s0003g04310.t01	Wine grape	cytosol	33.33	66.13
EER95386	Sorghum	endoplasmic reticulum, plasma membrane	47.15	58.59

Protein Annotations

MapMan:1.1.9.1.4	Gene3D:1.20.20.10	GO:A0A078HPL5	UniProt:A0A078HPL5	InterPro:ATP_synth_F0_csu	InterPro:ATP_synth_F0_csu_DDCD_BS
InterPro:ATP_synth_F0_csu_sf	InterPro:ATP_synth_csu_bac/chlpt	InterPro:ATPase_proteolipid_c-like_dom	EnsemblPlants:CDY40490	ProteinID:CDY40490	ProteinID:CDY40490.1
InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0033177	GO:GO:0045263	EnsemblPlantsGene:GSBRNA2T00069761001
InterPro:IPR038662	HAMAP:MF_01396	PFAM:PF00137	PRINTS:PR00124	ScanProsite:PS00605	PANTHER:PTHR10031
PANTHER:PTHR10031:SF6	SUPFAM:SSF81333	TIGRFAMs:TIGR01260	TMHMM:TMhelix	UniParc:UPI0004EEA786	SEG:seg

Description

BnaC09g14480DBnaC09g14480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPL5]

Coordinates

chrLK032472:+:229539..229910

Molecular Weight (calculated)

12514.3 Da

IEP (calculated)

6.515

GRAVY (calculated)

0.638

Length

123 amino acids

Sequence
(BLAST)

001: MSRVQILSSL HIPALLSSNE ESILDLFFKN KIGHTYNSSG PTPGPPVSAA SVIAAGLAVG LASIGPGVGQ GTAAGQAVEG IARQPEAEGK IRGTLLLSLA
101: FMEALTIYGL VVALALLFAN LFV

Best Arabidopsis Sequence Match ( ATCG00140.1 )
(BLAST)

1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Arabidopsis Description

ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.