Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g059660.1.1 | Tomato | plastid | 41.41 | 50.62 |
| Solyc08g028860.1.1 | Tomato | endoplasmic reticulum, vacuole | 40.4 | 49.38 |
| Solyc10g044550.1.1 | Tomato | endoplasmic reticulum, extracellular | 39.39 | 48.15 |
| Solyc12g062620.1.1 | Tomato | cytosol, peroxisome, plastid | 31.31 | 45.59 |
| Solyc07g021260.1.1 | Tomato | cytosol | 25.25 | 36.76 |
Protein Annotations
| Gene3D:1.20.20.10 | MapMan:17.7.2.1.31 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_sf | InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0003824 | GO:GO:0005198 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 |
| GO:GO:0006412 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015078 |
| GO:GO:0015986 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0033177 | GO:GO:0045263 | GO:GO:0046933 | InterPro:IPR038662 | UniProt:K4DE42 | HAMAP:MF_00251 |
| PFAM:PD002101 | PFAM:PF00137 | PFAM:PF00444 | PRINTS:PR00124 | ScanProsite:PS00828 | PANTHER:PTHR10031 |
| PANTHER:PTHR10031:SF6 | InterPro:Ribosomal_L36 | InterPro:Ribosomal_L36_sp | SUPFAM:SSF57840 | SUPFAM:SSF81333 | EnsemblPlantsGene:Solyc12g035850.1 |
| EnsemblPlants:Solyc12g035850.1.1 | TIGRFAMs:TIGR01022 | TMHMM:TMhelix | UniParc:UPI0002769E99 | : | : |
Description
No Description!
Coordinates
chr12:-:54311230..54315895
Molecular Weight (calculated)
10848.6 Da
IEP (calculated)
11.195
GRAVY (calculated)
0.047
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MDIYEELVVN PLISAASVIA AGLFVRLASI GPGVGQVTIA GQAIEGIMRQ PEAEGKIRGM INMKTRASVR KICEKCRLIH RRGRIIVICS NPRHKQRQG
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.