Factsheet for Solyc12g021280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
plasma membrane 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016911	Potato	plasma membrane	88.29	98.99
GSMUA_Achr7P17230_001	Banana	cytosol	73.15	81.69
KRH75488	Soybean	plastid	80.9	77.82
KRH70612	Soybean	plastid	81.44	77.8
TraesCS1D01G376000.1	Wheat	cytosol	69.37	77.62
VIT_01s0011g03010.t01	Wine grape	plastid	78.56	76.09
Bra004340.1-P	Field mustard	plastid	76.94	75.98
CDX95985	Canola	plastid	76.94	75.84
CDY33589	Canola	plastid	76.94	75.84
AT1G68830.1	Thale cress	plastid	76.58	75.62
HORVU1Hr1G078410.3	Barley	cytosol, plasma membrane	71.53	74.21
KXG22466	Sorghum	plastid	72.25	71.35
TraesCS1B01G388900.1	Wheat	plastid	71.71	71.2
Os05t0549100-02	Rice	plastid	71.53	71.02
TraesCS1A01G369800.1	Wheat	plastid	71.35	70.84
Zm00001d038894_P002	Maize	plastid	71.53	67.17
Solyc10g085680.1.1	Tomato	plastid	30.27	33.8

Protein Annotations

MapMan:1.1.1.4.1.1	Gene3D:1.10.510.10	MapMan:18.4.3.8	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006468	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009643	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0042548	GO:GO:0042651	InterPro:IPR000719
UniProt:K4DDP7	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR11584	PANTHER:PTHR11584:SF316	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g021280.1	EnsemblPlants:Solyc12g021280.1.1	UniParc:UPI00027699D9	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:15120633..15133486

Molecular Weight (calculated)

62422.9 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.086

Length

555 amino acids

Sequence
(BLAST)

001: MAAVGIGGVV LHSSFLGKKL GILKPLCLSI RLKKQCNFSI CSSSVHDLFV GVGVGLPCTV MECGDIIYRS TLPKSNGITV TVPGVILALG TLSYLWATPG
101: VAPGFFDMFV LAFIERFFRP IYKKDDIVLG KKLGEGSFGS VYRVSLARKP SSKPADLVLK KATEYGAVEI WMNERVRRAC ANSCADFLYG FRETSSKKGA
201: EYWLLWRFEG EATLADLMQS RDFPYNVESL ILREVQDLPK GLDRENRIIL TIMRQLLFAL DGLHSTGIVH RDIKPQNIIF SEGSRAFKII DLGAAADLRV
301: GINYIPKEFL LDPRYAAPEQ YIMSTQTPSA PSAPVATALS PVLWQLNLPD RFDIYSVGLI FLQMAFPGLR SDNSLIQFNR QLKRCDYDLV SWRQSVEPRA
401: GPELRKGFEL LDLDGGIGWE LLTSMVRFKA RQRISAKTAL AHPYFDREGL LALSFIQNLK LQFLRATQQD YSEAANWVVQ LMAKSGTEQD GGFTEAQLQQ
501: LREIEPKKKS NAQRNALASA LRLQRKIIKT LNESMDDLSN KRKSLWWSRW IPREE

Best Arabidopsis Sequence Match ( AT1G68830.1 )
(BLAST)

001: MATISPGGAY IGTPSPFLGK KLKPFSLTSP ILSFKPTVKL NSSCRAQLID TVHNLFIGVG VGLPCTVMEC GDMIYRSTLP KSNGLTITAP GVALALTALS
101: YLWATPGVAP GFFDMFVLAF VERLFRPTFR KDDFVVGKKL GEGSFGVVYK VSLSKKRSNE EGEYVLKKAT EYGAVEIWMN ERVRRACGNS CADFVYGFLD
201: KSSKKGPEYW LLWKYEGEST LAGLMQSKEF PYNVETIILG KVQDLPKGLE RENKIIQTIM RQLLFALDGL HSTGIIHRDV KPQNIIFSEG SRSFKIIDLG
301: AAADLRVGIN YIPKEFLLDP RYAAPEQYIM STQTPSAPSA PVAAALSPVL WQMNLPDRFD IYSIGLIFLQ MAFPSLRSDS NLIQFNRQLK RCDYDLTAWR
401: KLVEPRASAD LRRGFELVDL DGGIGWELLT SMVRYKARQR ISAKAALAHP YFDRQGLLAL SVMQNLRMQY FRATQQDYSE AANWVIQLMA KNGTEKDGGF
501: TETQLQELRE KEPRKKANAQ RNALASALRL QRKLVKTVTE TIDEISDGRK TVWWNRWIPR EE

Arabidopsis Description

STN7Serine/threonine-protein kinase STN7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S713]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.