Factsheet for Solyc11g007680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070341	Potato	cytosol	94.93	94.24
GSMUA_Achr6P17130_001	Banana	cytosol	21.01	42.03
VIT_13s0074g00230.t01	Wine grape	cytosol	31.88	33.33
CDX73649	Canola	plastid	30.43	30.66
CDX78074	Canola	plastid	30.43	30.22
GSMUA_Achr6P07550_001	Banana	nucleus	21.01	29.59
Bra006913.1-P	Field mustard	cytosol, plastid	29.71	29.5
AT3G52230.1	Thale cress	cytosol	26.09	24.83
KRG92059	Soybean	endoplasmic reticulum	23.19	22.54
KRH34716	Soybean	cytosol	22.46	22.3
KRH07959	Soybean	nucleus	16.67	20.91
CDX95325	Canola	plastid	26.81	19.07

Protein Annotations

EnsemblPlants:Solyc11g007680.1.1	EnsemblPlantsGene:Solyc11g007680.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36374
SEG:seg	TMHMM:TMhelix	UniParc:UPI000276A425	UniProt:K4D529	MapMan:35.2	:

Description

No Description!

Coordinates

chr11:-:1911885..1914794

Molecular Weight (calculated)

15223.8 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.643

Length

138 amino acids

Sequence
(BLAST)

001: MADTTTTTTI SGDSITVTDD QKNNPTNPLA SFISSVLQLF KPPPASSKKI EPTAATSDLK PIASAEKEEK AAVVKFPRQD LPSLKLETEG AEPNTNPIVL
101: WQVYAIGGFF VLRWAWSRWN ERRGNRKPSD EEPPPSQE

Best Arabidopsis Sequence Match ( AT3G52230.1 )
(BLAST)

001: MAEEAQVDRS NGSDSSSPPI KLPPFITNLF AFLQPKPPPA TIDANAPKPT GEKEPLKSTY ETVTFPYNPP KSAEPIKFEA EPSSGRTSNS VILWQVYALG
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED

Arabidopsis Description

AT3g52230/F4F15_340 [Source:UniProtKB/TrEMBL;Acc:Q9SUY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.