CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34716	Soybean	cytosol	82.39	84.17
KRH07959	Soybean	nucleus	54.93	70.91
GSMUA_Achr6P17130_001	Banana	cytosol	16.9	34.78
GSMUA_Achr6P07550_001	Banana	nucleus	18.31	26.53
CDX73649	Canola	plastid	25.35	26.28
VIT_13s0074g00230.t01	Wine grape	cytosol	23.94	25.76
Bra006913.1-P	Field mustard	cytosol, plastid	23.24	23.74
CDX78074	Canola	plastid	23.24	23.74
Solyc11g007680.1.1	Tomato	plastid	22.54	23.19
PGSC0003DMT400070341	Potato	cytosol	22.54	23.02
AT3G52230.1	Thale cress	cytosol	23.24	22.76
CDX95325	Canola	plastid	17.61	12.89

Protein Annotations

EMBL:ACUP02012727	EnsemblPlants:KRG92059	EnsemblPlantsGene:GLYMA_20G188900	EntrezGene:100799217	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR36374	ProteinID:KRG92059	ProteinID:KRG92059.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000233DADE	UniProt:I1NHP3	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:42751896..42754624

Molecular Weight (calculated)

15641.3 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.878

Length

142 amino acids

Sequence
(BLAST)

001: MSRRSDETAV TEEAPPKQSL PNLFSLFPKI NFQLPFLPPK PKPKPQEPNP QAQQEGPKPS RVQFPKTQVA VVASSPLQAE PDADHSPAAK TTNPLILWQI
101: YAIGAIAISS WVWARWNERK GRGGGSPNDE RGEGRHSDDG NQ

Best Arabidopsis Sequence Match ( AT3G52230.1 )
(BLAST)

001: MAEEAQVDRS NGSDSSSPPI KLPPFITNLF AFLQPKPPPA TIDANAPKPT GEKEPLKSTY ETVTFPYNPP KSAEPIKFEA EPSSGRTSNS VILWQVYALG
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED

Arabidopsis Description

AT3g52230/F4F15_340 [Source:UniProtKB/TrEMBL;Acc:Q9SUY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.