Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78074 | Canola | plastid | 91.24 | 89.93 |
| Bra006913.1-P | Field mustard | cytosol, plastid | 89.05 | 87.77 |
| AT3G52230.1 | Thale cress | cytosol | 57.66 | 54.48 |
| GSMUA_Achr6P17130_001 | Banana | cytosol | 22.63 | 44.93 |
| VIT_13s0074g00230.t01 | Wine grape | cytosol | 34.31 | 35.61 |
| GSMUA_Achr6P07550_001 | Banana | nucleus | 24.82 | 34.69 |
| PGSC0003DMT400070341 | Potato | cytosol | 31.39 | 30.94 |
| Solyc11g007680.1.1 | Tomato | plastid | 30.66 | 30.43 |
| CDX95325 | Canola | plastid | 37.23 | 26.29 |
| KRG92059 | Soybean | endoplasmic reticulum | 26.28 | 25.35 |
| KRH34716 | Soybean | cytosol | 24.82 | 24.46 |
| KRH07959 | Soybean | nucleus | 16.79 | 20.91 |
Protein Annotations
| EnsemblPlants:CDX73649 | EnsemblPlantsGene:GSBRNA2T00109229001 | PANTHER:PTHR36374 | ProteinID:CDX73649 | ProteinID:CDX73649.1 | SEG:seg |
| UniParc:UPI0004EE58CF | MapMan:35.2 | : | : | : | : |
Description
BnaC08g23540D
Coordinates
chrLK031799:-:1958746..1960083
Molecular Weight (calculated)
14960.1 Da
IEP (calculated)
4.377
GRAVY (calculated)
-0.893
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQPQQQRE SDSSPPQLKL PSFVVNLFPF LQPKSPSPAN GADGAPKPAG GVAKDKETQN STVTFPYNPP KNAEPLKLEA EPSSGSTSNS LVIWQVYALG
101: GFLVLKWAWA RWNERNATSD KKEDDDADDQ APHPEDD
101: GFLVLKWAWA RWNERNATSD KKEDDDADDQ APHPEDD
001: MAEEAQVDRS NGSDSSSPPI KLPPFITNLF AFLQPKPPPA TIDANAPKPT GEKEPLKSTY ETVTFPYNPP KSAEPIKFEA EPSSGRTSNS VILWQVYALG
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED
Arabidopsis Description
AT3g52230/F4F15_340 [Source:UniProtKB/TrEMBL;Acc:Q9SUY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.