Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73649 | Canola | plastid | 54.48 | 57.66 |
| CDX78074 | Canola | plastid | 55.17 | 57.55 |
| Bra006913.1-P | Field mustard | cytosol, plastid | 54.48 | 56.83 |
| GSMUA_Achr6P17130_001 | Banana | cytosol | 22.07 | 46.38 |
| VIT_13s0074g00230.t01 | Wine grape | cytosol | 28.97 | 31.82 |
| GSMUA_Achr6P07550_001 | Banana | nucleus | 20.69 | 30.61 |
| Solyc11g007680.1.1 | Tomato | plastid | 24.83 | 26.09 |
| PGSC0003DMT400070341 | Potato | cytosol | 24.83 | 25.9 |
| KRH34716 | Soybean | cytosol | 22.76 | 23.74 |
| KRG92059 | Soybean | endoplasmic reticulum | 22.76 | 23.24 |
| CDX95325 | Canola | plastid | 31.03 | 23.2 |
| KRH07959 | Soybean | nucleus | 13.1 | 17.27 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824388 | UniProt:A0A178VJG6 | ProteinID:AEE78918.1 | ArrayExpress:AT3G52230 | EnsemblPlantsGene:AT3G52230 |
| RefSeq:AT3G52230 | TAIR:AT3G52230 | RefSeq:AT3G52230-TAIR-G | EnsemblPlants:AT3G52230.1 | TAIR:AT3G52230.1 | EMBL:AY052320 |
| EMBL:AY061897 | EMBL:AY087231 | Unigene:At.3220 | ProteinID:CAB41343.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009707 | GO:GO:0009941 | GO:GO:0016020 | RefSeq:NP_566963.1 | ProteinID:OAP05611.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR36374 | UniProt:Q9SUY2 | UniParc:UPI000009C8D8 | SEG:seg | : |
Description
AT3g52230/F4F15_340 [Source:UniProtKB/TrEMBL;Acc:Q9SUY2]
Coordinates
chr3:+:19371135..19372687
Molecular Weight (calculated)
16125.3 Da
IEP (calculated)
4.242
GRAVY (calculated)
-0.990
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAQVDRS NGSDSSSPPI KLPPFITNLF AFLQPKPPPA TIDANAPKPT GEKEPLKSTY ETVTFPYNPP KSAEPIKFEA EPSSGRTSNS VILWQVYALG
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED
101: GFLVLKWAWA RWNERNERSD KKEATGDDDQ KDDDEDDQSS DGHED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.