Factsheet for Solyc10g017940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	15.0	47.62
ATCG00280.1	Thale cress	mitochondrion	71.5	30.23
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	9.5	22.35
Solyc10g047410.1.1	Tomato	nucleus	31.5	21.14
CDX99953	Canola	plastid	63.5	20.03
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	63.5	20.03
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	63.5	20.03
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	63.5	19.84
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	12.5	13.66
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	5.0	10.2
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	3.0	8.22
Solyc10g018840.1.1	Tomato	mitochondrion	3.5	8.14
Solyc09g016930.1.1	Tomato	mitochondrion	5.0	7.58
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	4.5	7.26
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	4.0	6.3
Solyc12g038080.1.1	Tomato	nucleus	2.0	5.41
Solyc12g027550.1.1	Tomato	extracellular	1.0	2.78

Protein Annotations

Gene3D:1.10.10.670	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156
GO:GO:0046872	UniProt:K4CYR8	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180
PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	EnsemblPlantsGene:Solyc10g017940.1	EnsemblPlants:Solyc10g017940.1.1	UniParc:UPI000276C576	:

Description

No Description!

Coordinates

chr10:+:6183937..6185568

Molecular Weight (calculated)

21900.0 Da

IEP (calculated)

6.509

GRAVY (calculated)

0.051

Length

200 amino acids

Sequence
(BLAST)

001: MSNVILFIIR SSDSLFGGIY DTWALGGGDV RKITNLSLSP SMIFGYLLKS PFGGEGWIVS VDDLEDLIEG HVWLGSICIL GEIWHILTKP FAWARCALFN
101: NAAYPSEFYG PTRPEASQAQ AFTFLVRDQR LGANVGSSQG STGSDRQPLQ ERRSTKYMTH APLGSLNSVG GVANEINVVN YVSPRSWLAS SHFNLGFFSL

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.