Factsheet for ATCG00280.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50741	Barley	plastid	97.04	97.04
CAA34014	Rice	extracellular	96.41	96.41
GRMZM5G856777_P01	Maize	plastid	95.14	95.14
Bra041123.1-P	Field mustard	plastid	15.64	94.87
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	42.71	94.39
TraesCS2A01G073900.1	Wheat	plastid	15.01	91.03
KXG33956	Sorghum	cytosol, golgi, plastid	15.01	91.03
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	34.46	90.56
TraesCS2D01G573000.1	Wheat	plastid	25.16	88.15
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	24.52	87.88
TraesCS4A01G153000.1	Wheat	plastid	14.38	87.18
HORVU5Hr1G082910.1	Barley	plastid	14.38	86.08
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	13.95	84.62
KRH57644	Soybean	extracellular, golgi	11.21	82.81
KXG38767	Sorghum	plastid	13.95	81.48
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	10.57	79.37
Solyc10g017940.1.1	Tomato	plastid	30.23	71.5
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	57.08	70.87
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	12.26	68.24
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	88.37	65.93
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	88.37	65.93
CDX99953	Canola	plastid	88.37	65.93
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	88.37	65.31
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	17.12	44.26
Solyc10g047410.1.1	Tomato	nucleus	27.06	42.95
KRG92989	Soybean	plastid	12.26	38.93
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	2.75	17.81
Solyc10g018840.1.1	Tomato	mitochondrion	2.96	16.28
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	3.17	15.31
TraesCS2D01G572900.1	Wheat	plastid	4.65	15.28
Solyc09g016930.1.1	Tomato	mitochondrion	4.02	14.39
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	4.65	14.19
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	3.59	13.71
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	4.44	13.55
Solyc12g038080.1.1	Tomato	nucleus	2.11	13.51
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	2.96	13.46
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	2.96	13.46
OQU80575	Sorghum	extracellular, golgi, mitochondrion	2.75	13.4
KRH29413	Soybean	cytosol, plastid, vacuole	3.59	12.59
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	3.17	11.81
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	2.33	11.7
PGSC0003DMT400004386	Potato	mitochondrion	5.29	10.68
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	4.65	8.33
AGP50740	Barley	plastid	5.5	7.37
CAA34013	Rice	plasma membrane	5.5	7.37
Zm00001d000260_P001	Maize	plastid	5.5	7.37
Solyc12g027550.1.1	Tomato	extracellular	1.06	6.94

Protein Annotations

MapMan:1.1.1.2.1.4	Gene3D:1.10.10.670	PDB:5MDX	EntrezGene:844773	UniProt:A0A1B1W4T4	ProteinID:ANW47786.1
ArrayExpress:ATCG00280	EnsemblPlantsGene:ATCG00280	RefSeq:ATCG00280	TAIR:ATCG00280	RefSeq:ATCG00280-TAIR-G	EnsemblPlants:ATCG00280.1
TAIR:ATCG00280.1	ProteinID:BAA84381.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009533
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009539	GO:GO:0009579	GO:GO:0009767
GO:GO:0009772	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872
HAMAP:MF_01496	RefSeq:NP_051055.1	UniProt:P56778	PFAM:PF00421	Symbol:PSBC	InterPro:PSII_PsbC
InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TIGRFAMs:TIGR01153
TMHMM:TMhelix	UniParc:UPI0000132622	SEG:seg	:	:	:

Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]

Coordinates

chrPt:+:33720..35141

Molecular Weight (calculated)

51870.7 Da

IEP (calculated)

7.220

GRAVY (calculated)

0.252

Length

473 amino acids

Sequence
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.