CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KXG31875	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	35.05	34.69
Solyc10g018840.1.1	Tomato	mitochondrion	22.68	25.58
KRH29413	Soybean	cytosol, plastid, vacuole	28.87	20.74
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	24.74	19.35
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	21.65	16.54
KXG38767	Sorghum	plastid	5.15	6.17
KXG33956	Sorghum	cytosol, golgi, plastid	4.12	5.13
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	5.15	2.78
ATCG00280.1	Thale cress	mitochondrion	13.4	2.75
CDX99953	Canola	plastid	11.34	1.74
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	11.34	1.74
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	11.34	1.74
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	11.34	1.72
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	6.19	1.57

Protein Annotations

MapMan:35.1	UniProt:A0A1Z5RAV7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521
GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlants:OQU80575	ProteinID:OQU80575
ProteinID:OQU80575.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
EnsemblPlantsGene:SORBI_3007G145901	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI0001A879D7	RefSeq:XP_002444444.1	:

Description

hypothetical protein

Coordinates

chr7:+:57570703..57571296

Molecular Weight (calculated)

11547.2 Da

IEP (calculated)

6.800

GRAVY (calculated)

0.371

Length

97 amino acids

Sequence
(BLAST)

1: MRVFVRGWQL RISLVKILYF LGRFYHVEML FNGTFVLAGH DQETTDFAWW AGNTRLINLF GKLPEAHVAY AGLIVFWFET MNLFEVAYFI LEKPMYE

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.