CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	peroxisome
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KXG31875	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	85.19	88.46
KXG33956	Sorghum	cytosol, golgi, plastid	83.95	87.18
TraesCS2A01G073900.1	Wheat	plastid	81.48	84.62
TraesCS4A01G153000.1	Wheat	plastid	77.78	80.77
HORVU5Hr1G082910.1	Barley	plastid	77.78	79.75
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	76.54	79.49
KRH57644	Soybean	extracellular, golgi	55.56	70.31
TraesCS2D01G573000.1	Wheat	plastid	80.25	48.15
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	77.78	47.73
KRG92989	Soybean	plastid	48.15	26.17
AGP50741	Barley	plastid	85.19	14.59
ATCG00280.1	Thale cress	mitochondrion	81.48	13.95
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	60.49	12.86
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	66.67	8.52
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	66.67	8.52
CDX99953	Canola	plastid	66.67	8.52
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	66.67	8.44
OQU80575	Sorghum	extracellular, golgi, mitochondrion	6.17	5.15

Protein Annotations

MapMan:35.1	UniProt:A0A1B6QLJ2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521
GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlants:KXG38767	ProteinID:KXG38767
ProteinID:KXG38767.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
EnsemblPlantsGene:SORBI_3001G276500	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI00081ADC20	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:53887513..53888083

Molecular Weight (calculated)

8852.6 Da

IEP (calculated)

9.153

GRAVY (calculated)

0.394

Length

81 amino acids

Sequence
(BLAST)

1: MTHAPLGSLI SVGGVATEIN TVNYVSSRSW LATSHFVLGF FFFVGHLWHA GRARAAAAGF EKGIDRDLEP VLYTVLSLNR F

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.