CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KRH24811	AT2G28800.1	15988575
ATCG00280.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57644	Soybean	extracellular, golgi	30.2	70.31
KXG33956	Sorghum	cytosol, golgi, plastid	28.86	55.13
Bra041123.1-P	Field mustard	plastid	28.19	53.85
TraesCS2A01G073900.1	Wheat	plastid	28.19	53.85
HORVU5Hr1G082910.1	Barley	plastid	26.17	49.37
TraesCS4A01G153000.1	Wheat	plastid	25.5	48.72
KXG38767	Sorghum	plastid	26.17	48.15
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	24.83	47.44
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	31.54	35.61
TraesCS2D01G573000.1	Wheat	plastid	28.86	31.85
ATCG00280.1	Thale cress	mitochondrion	38.93	12.26
CAA34014	Rice	extracellular	37.58	11.84
GRMZM5G856777_P01	Maize	plastid	36.91	11.63
AGP50741	Barley	plastid	36.24	11.42
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	36.91	8.68
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	36.91	8.68
CDX99953	Canola	plastid	36.91	8.68
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	36.91	8.59
KRH29413	Soybean	cytosol, plastid, vacuole	6.71	7.41

Protein Annotations

MapMan:35.2	EMBL:ACUP02012777	EnsemblPlantsGene:GLYMA_20G242300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	UniProt:K7N5D4
EnsemblPlants:KRG92989	ProteinID:KRG92989	ProteinID:KRG92989.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like
PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI0002957BA7	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:47305746..47307205

Molecular Weight (calculated)

16651.3 Da

IEP (calculated)

9.935

GRAVY (calculated)

0.304

Length

149 amino acids

Sequence
(BLAST)

001: MVEVHSLTPT SREAISSYEA RTLQPLTVFG VRHASVSVSD TDTTLVLRSI FWTLQVSTCP MSVSVLVLHR FPGIETVTSR SQGNKLVLAP RLTFYLIQRS
101: WLAASHFVLG LFLFVGHLWH AGRVHTAAAR FEKGIDRDFE LVLSMTPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.