Factsheet for HORVU5Hr1G082910.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, plastid
iPSORT:	plastid
MultiLoc:	golgi
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	91.14	92.31
TraesCS2A01G073900.1	Wheat	plastid	87.34	88.46
KXG33956	Sorghum	cytosol, golgi, plastid	84.81	85.9
TraesCS4A01G153000.1	Wheat	plastid	83.54	84.62
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	82.28	83.33
KXG38767	Sorghum	plastid	79.75	77.78
KRH57644	Soybean	extracellular, golgi	55.7	68.75
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	82.28	49.24
KRG92989	Soybean	plastid	49.37	26.17
AGP50741	Barley	plastid	91.14	15.22
CAA34014	Rice	extracellular	88.61	14.8
GRMZM5G856777_P01	Maize	plastid	87.34	14.59
ATCG00280.1	Thale cress	mitochondrion	86.08	14.38
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	70.89	8.83
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	70.89	8.83
CDX99953	Canola	plastid	70.89	8.83
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	70.89	8.75
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	11.39	8.65
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	11.39	8.65
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	6.33	5.32
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	11.39	3.41
AGP50740	Barley	plastid	13.92	3.12
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A287S196	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521
GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlantsGene:HORVU5Hr1G082910	EnsemblPlants:HORVU5Hr1G082910.1
PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077
TMHMM:TMhelix	UniParc:UPI000B483EAA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:568641640..568642864

Molecular Weight (calculated)

8746.5 Da

IEP (calculated)

7.682

GRAVY (calculated)

0.273

Length

79 amino acids

Sequence
(BLAST)

1: MTHAPLGSLN FVGGVATEIN AVNYVSPRSW LSTSHFVLGF LFFCWVHLWH AGRARAAAAG FEKGIDRDLE PVLYMNPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.