CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	16.49	100.0
CAA34014	Rice	extracellular	98.73	98.73
GRMZM5G856777_P01	Maize	plastid	97.25	97.25
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	43.97	97.2
ATCG00280.1	Thale cress	mitochondrion	97.04	97.04
KXG33956	Sorghum	cytosol, golgi, plastid	15.43	93.59
HORVU5Hr1G082910.1	Barley	plastid	15.22	91.14
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	14.8	89.74
KXG38767	Sorghum	plastid	14.59	85.19
KRH57644	Soybean	extracellular, golgi	10.36	76.56
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	86.05	64.2
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	86.05	64.2
CDX99953	Canola	plastid	86.05	64.2
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	86.05	63.59
KRG92989	Soybean	plastid	11.42	36.24
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	2.75	12.5
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	2.75	12.5
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	2.33	11.7
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	4.65	8.33
AGP50740	Barley	plastid	5.5	7.37

Protein Annotations

MapMan:1.1.1.2.1.4	Gene3D:1.10.10.670	EntrezGene:4525152	EnsemblPlants:AGP50741	EnsemblPlantsGene:AGP50741	ProteinID:AGP50741
ProteinID:AGP50741.1	ProteinID:AMA20232.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156
GO:GO:0046872	ENA:KC912687.1:CDS:9626..11047	HAMAP:MF_01496	PFAM:PF00421	InterPro:PSII_PsbC	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	GO:S4Z184	UniProt:S4Z184	SUPFAM:SSF161077
TIGRFAMs:TIGR01153	TMHMM:TMhelix	UniParc:UPI0000E8A861	RefSeq:YP_874639.1	SEG:seg	:

Description

psbCphotosystem II CP43 chlorophyll apoprotein

Coordinates

chrPt:+:9626..11047

Molecular Weight (calculated)

52138.0 Da

IEP (calculated)

7.230

GRAVY (calculated)

0.265

Length

473 amino acids

Sequence
(BLAST)

001: MKILYSLRRF YHVETLFNGT FVLAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVLDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGL GAFLLVLKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GFICVFGGIW HILTKPFAWA RRAFVWSGEA YLSYSLAALS VFGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFFFVG HLWHAGRARA AAAGFEKGID RDLEPVLYMN PLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.