CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77209
CDY31733

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	CDX77209	AT2G28800.1	15988575
ATCG00280.1	CDY31733	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99953	Canola	plastid	99.06	100.0
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	99.06	100.0
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	99.06	100.0
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	31.56	94.39
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	25.47	90.56
ATCG00280.1	Thale cress	mitochondrion	65.31	88.37
AGP50741	Barley	plastid	63.59	86.05
CAA34014	Rice	extracellular	63.12	85.41
GRMZM5G856777_P01	Maize	plastid	62.5	84.57
KRH57644	Soybean	extracellular, golgi	8.28	82.81
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	7.81	79.37
Bra041123.1-P	Field mustard	plastid	9.53	78.21
KXG33956	Sorghum	cytosol, golgi, plastid	9.38	76.92
TraesCS2A01G073900.1	Wheat	plastid	9.06	74.36
HORVU5Hr1G082910.1	Barley	plastid	8.75	70.89
TraesCS4A01G153000.1	Wheat	plastid	8.59	70.51
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	8.44	69.23
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	13.91	67.42
KXG38767	Sorghum	plastid	8.44	66.67
TraesCS2D01G573000.1	Wheat	plastid	13.91	65.93
Solyc10g017940.1.1	Tomato	plastid	19.84	63.5
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	35.78	60.1
Solyc10g047410.1.1	Tomato	nucleus	19.69	42.28
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	11.88	41.53
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	5.16	38.82
KRG92989	Soybean	plastid	8.59	36.91
Solyc10g018840.1.1	Tomato	mitochondrion	2.03	15.12
TraesCS2D01G572900.1	Wheat	plastid	3.28	14.58
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	1.56	13.7
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	3.28	13.55
Solyc12g038080.1.1	Tomato	nucleus	1.56	13.51
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	2.03	13.27
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	3.12	12.9
Solyc09g016930.1.1	Tomato	mitochondrion	2.66	12.88
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	2.34	12.1
OQU80575	Sorghum	extracellular, golgi, mitochondrion	1.72	11.34
KRH29413	Soybean	cytosol, plastid, vacuole	2.34	11.11
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	1.72	10.58
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	1.72	10.58
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	2.03	10.24
PGSC0003DMT400004386	Potato	mitochondrion	3.44	9.4
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	1.25	8.51
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	2.97	7.2
Solyc12g027550.1.1	Tomato	extracellular	0.78	6.94
AGP50740	Barley	plastid	3.59	6.52
CAA34013	Rice	plasma membrane	3.59	6.52
Zm00001d000260_P001	Maize	plastid	3.59	6.52

Protein Annotations

MapMan:1.1.1.2.1.4	Gene3D:1.10.10.670	Gene3D:1.20.85.10	GO:A0A078HPI2	UniProt:A0A078HPI2	EnsemblPlants:CDY39486
ProteinID:CDY39486	ProteinID:CDY39486.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009536	GO:GO:0009579
GO:GO:0009767	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0042651	GO:GO:0045156
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00067984001	InterPro:IPR036854	HAMAP:MF_01496	PFAM:PF00124	PFAM:PF00421
ScanProsite:PS00244	InterPro:PSII_PsbC	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF161077	SUPFAM:SSF81483	TIGRFAMs:TIGR01153
TMHMM:TMhelix	UniParc:UPI0004EF33CD	SEG:seg	:	:	:

Description

BnaC03g60960DPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPI2]

Coordinates

chrLK032448:-:298791..301239

Molecular Weight (calculated)

70720.4 Da

IEP (calculated)

6.408

GRAVY (calculated)

0.330

Length

640 amino acids

Sequence
(BLAST)

001: MNRRIAMTIA LGKFTKDEKD LFDIMDDWLR RDRFVFVGWS GLLLFPCAYF ALGGWFTGQS GWFFAPSFGV AAIFRFILFF QGFHNWTLNP FHMMGVAGVL
101: GAALLCAIHG ATVENTLFED GDGANTFRAF NPTQAEETYS MVTANRFWSQ IFGVAFSNKR WLHFFMLFVP VTGLWMSALG VVGLALNLRA YDFVSQEIRA
201: AEDPEFETFY TKNILLNEAL AGRDQETTGF AWWAGNARLI NLSGKLLGAH VAHAGLIVFW AGAMNLFEVA HFVPEKPMYE QGLILLPHLA TLGWGVGPGG
301: EVIDTFPYFV SGVLHLISSA VLGFGGIYHA LLGPETLEES FPFFGYVWKD RNKMTTILGI HLILLGVGAF LLVFKALYFG GVYDTWAPGG GDVRKITNLT
401: LSPSVIFGYL LKSPFGGEGW IVSVDDLEDI IGGHVWLGSI CIFGGIWHIL TKPFAWARRA LVWSGEAYLS YSLAALSVCG FIACCFVWFN NTAYPSEFYG
501: PTGPEASQAQ AFTFLVRDQR LGANVGSAQG PTGLGKYLMR SPTGEVIFGG ETMRFWDLRA PWLEPLRGPN GLDLRGVATE INAVNYVSPR SWLSTSHFVL
601: GFFLFVGHLW HAGRARAAAA GFEKGIDRDF EPVLSMTPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.