Factsheet for Solyc09g016930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038080.1.1	Tomato	nucleus	37.88	67.57
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	26.52	35.71
Solyc10g018840.1.1	Tomato	mitochondrion	19.7	30.23
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	19.7	20.97
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	15.15	15.75
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	6.06	9.41
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	3.03	5.48
Solyc10g017940.1.1	Tomato	plastid	7.58	5.0
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	6.06	4.37
ATCG00280.1	Thale cress	mitochondrion	14.39	4.02
TraesCS2D01G572900.1	Wheat	plastid	3.79	3.47
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	2.27	3.19
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	1.52	3.17
Solyc12g027550.1.1	Tomato	extracellular	1.52	2.78
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	12.88	2.68
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	12.88	2.68
CDX99953	Canola	plastid	12.88	2.68
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	12.88	2.66
Solyc10g047410.1.1	Tomato	nucleus	2.27	1.01

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	UniProt:K4CS62	PFAM:PF00421	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	EnsemblPlantsGene:Solyc09g016930.1	EnsemblPlants:Solyc09g016930.1.1
UniParc:UPI000276BF30	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:11794822..11795220

Molecular Weight (calculated)

15049.1 Da

IEP (calculated)

10.045

GRAVY (calculated)

-0.104

Length

132 amino acids

Sequence
(BLAST)

001: MPCHLKNHIK LTLYSLRRFY HVETLFNGTL ALAGRDQETT GFAWWARNAR LINLSGKLLG AHVAHIYFFS YLEIQMDKKN FKFIFSINAS SSTSDGHEAS
101: GWGSSNCVPT RIHSIVWESL FSRKAKAEQI VI

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.