Factsheet for Solyc12g038080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 4
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	56.76	42.86
Solyc09g016930.1.1	Tomato	mitochondrion	67.57	37.88
Solyc10g018840.1.1	Tomato	mitochondrion	35.14	30.23
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	35.14	20.97
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	31.08	18.11
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	12.16	12.33
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	12.16	10.59
TraesCS2D01G572900.1	Wheat	plastid	9.46	4.86
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	4.05	3.19
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	2.7	3.17
Solyc12g027550.1.1	Tomato	extracellular	2.7	2.78
ATCG00280.1	Thale cress	mitochondrion	13.51	2.11
Solyc10g017940.1.1	Tomato	plastid	5.41	2.0
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	4.05	1.64
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	13.51	1.58
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	13.51	1.58
CDX99953	Canola	plastid	13.51	1.58
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	13.51	1.56
Solyc10g047410.1.1	Tomato	nucleus	4.05	1.01

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	UniProt:K4DEG3	PFAM:PF00421	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	EnsemblPlantsGene:Solyc12g038080.1	EnsemblPlants:Solyc12g038080.1.1
UniParc:UPI000276A33A	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:49282880..49283104

Molecular Weight (calculated)

8268.0 Da

IEP (calculated)

7.793

GRAVY (calculated)

0.219

Length

74 amino acids

Sequence
(BLAST)

1: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHIAHAGLI VFWAGAMNLF EVEE

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.