Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 3
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g066110.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00280.1 | Solyc11g066110.1.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g041230.1.1 | Tomato | mitochondrion, plastid | 44.88 | 58.16 |
| KRH29413 | Soybean | cytosol, plastid, vacuole | 54.33 | 51.11 |
| Solyc10g018840.1.1 | Tomato | mitochondrion | 29.13 | 43.02 |
| Solyc07g009000.1.1 | Tomato | cytosol, plasma membrane, plastid | 36.22 | 37.1 |
| Solyc12g038080.1.1 | Tomato | nucleus | 18.11 | 31.08 |
| OQU80575 | Sorghum | extracellular, golgi, mitochondrion | 16.54 | 21.65 |
| Solyc09g016930.1.1 | Tomato | mitochondrion | 15.75 | 15.15 |
| Solyc01g011480.1.1 | Tomato | cytosol, nucleus, plastid | 6.3 | 9.41 |
| Solyc01g044250.1.1 | Tomato | cytosol, golgi, vacuole | 3.15 | 5.48 |
| Solyc12g027550.1.1 | Tomato | extracellular | 2.36 | 4.17 |
| Solyc10g017940.1.1 | Tomato | plastid | 6.3 | 4.0 |
| ATCG00280.1 | Thale cress | mitochondrion | 11.81 | 3.17 |
| Solyc01g056470.1.1 | Tomato | golgi, plasma membrane | 3.94 | 2.73 |
| CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 10.24 | 2.05 |
| CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 10.24 | 2.05 |
| CDX99953 | Canola | plastid | 10.24 | 2.05 |
| CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 10.24 | 2.03 |
| Solyc10g047410.1.1 | Tomato | nucleus | 3.15 | 1.34 |
| Solyc10g061830.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009521 | GO:GO:0009579 |
| GO:GO:0009767 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | UniProt:K4D8J0 | PFAM:PF00421 | InterPro:PS_II_antenna-like_sf |
| InterPro:PS_antenna-like | PANTHER:PTHR33180 | PANTHER:PTHR33180:SF4 | SUPFAM:SSF161077 | EnsemblPlantsGene:Solyc11g045260.1 | EnsemblPlants:Solyc11g045260.1.1 |
| UniParc:UPI000276A76D | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:31298232..31299518
Molecular Weight (calculated)
14329.5 Da
IEP (calculated)
8.783
GRAVY (calculated)
0.012
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MPWLIWANLC FAWWDGNARL INLSGKLLGA HVAHAGLIVF WAGAMNLFEV AHFVPEKPMY EQGLILLPHL AALGWGVGPG GEHPFSIHRE IQSSKSIKRP
101: SWTKIQIDQS CWEVLPKGRK RLLPDQE
101: SWTKIQIDQS CWEVLPKGRK RLLPDQE
001: MGLPWYRVHT VVLNDPGRLL AVHIMHTALV AGWAGSMALY ELAVFDPSDP VLDPMWRQGM FVIPFMTRLG ITNSWGGWNI TGGTITNPGL WSYEGVAGAH
101: IVFSGLCFLA AIWHWVYWDL EIFCDERTGK PSLDLPKIFG IHLFLSGVAC FGFGAFHVTG LYGPGIWVSD PYGLTGKVQP VNPAWGVEGF DPFVPGGIAS
201: HHIAAGTLGI LAGLFHLSVR PPQRLYKGLR MGNIETVLSS SIAAVFFAAF VVAGTMWYGS ATTPIELFGP TRYQWDQGYF QQEIYRRVSA GLAENQSLSE
301: AWAKIPEKLA FYDYIGNNPA KGGLFRAGSM DNGDGIAVGW LGHPVFRNKE GRELFVRRMP TFFETFPVVL VDGDGIVRAD VPFRRAESKY SVEQVGVTVE
401: FYGGELNGVS YSDPATVKKY ARRAQLGEIF ELDRATLKSD GVFRSSPRGW FTFGHASFAL LFFFGHIWHG ARTLFRDVFA GIDPDLDAQV EFGAFQKLGD
501: PTTKRQAV
101: IVFSGLCFLA AIWHWVYWDL EIFCDERTGK PSLDLPKIFG IHLFLSGVAC FGFGAFHVTG LYGPGIWVSD PYGLTGKVQP VNPAWGVEGF DPFVPGGIAS
201: HHIAAGTLGI LAGLFHLSVR PPQRLYKGLR MGNIETVLSS SIAAVFFAAF VVAGTMWYGS ATTPIELFGP TRYQWDQGYF QQEIYRRVSA GLAENQSLSE
301: AWAKIPEKLA FYDYIGNNPA KGGLFRAGSM DNGDGIAVGW LGHPVFRNKE GRELFVRRMP TFFETFPVVL VDGDGIVRAD VPFRRAESKY SVEQVGVTVE
401: FYGGELNGVS YSDPATVKKY ARRAQLGEIF ELDRATLKSD GVFRSSPRGW FTFGHASFAL LFFFGHIWHG ARTLFRDVFA GIDPDLDAQV EFGAFQKLGD
501: PTTKRQAV
Arabidopsis Description
PSBBPhotosystem II CP47 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4X0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.