Factsheet for Solyc12g027550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	6.94	5.1
Solyc10g018840.1.1	Tomato	mitochondrion	5.56	4.65
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	4.17	4.11
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	4.17	3.53
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	5.56	3.23
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	2.78	3.17
Solyc12g038080.1.1	Tomato	nucleus	2.78	2.7
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	4.17	2.36
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	5.56	2.19
Solyc09g016930.1.1	Tomato	mitochondrion	2.78	1.52
ATCG00280.1	Thale cress	mitochondrion	6.94	1.06
Solyc10g017940.1.1	Tomato	plastid	2.78	1.0
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	6.94	0.79
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	6.94	0.79
CDX99953	Canola	plastid	6.94	0.79
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	6.94	0.78
Solyc10g047410.1.1	Tomato	nucleus	2.78	0.67

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	UniProt:K4DDS5	PFAM:PF00421	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	EnsemblPlantsGene:Solyc12g027550.1	EnsemblPlants:Solyc12g027550.1.1
TMHMM:TMhelix	UniParc:UPI0002769B5D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:24079003..24079221

Molecular Weight (calculated)

7664.5 Da

IEP (calculated)

5.607

GRAVY (calculated)

0.797

Length

72 amino acids

Sequence
(BLAST)

1: MTTILGIHLI LLGIGAFLLV FKALYFGGVY DIWAPGGGDV RKITNLTLSP SIIFGYLVKS PFGGEGLDCN DC

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.