Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 3
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g066110.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00280.1 | Solyc11g066110.1.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g061830.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 8.74 | 25.4 |
| Solyc10g047410.1.1 | Tomato | nucleus | 30.05 | 18.46 |
| ATCG00280.1 | Thale cress | mitochondrion | 44.26 | 17.12 |
| Solyc10g017940.1.1 | Tomato | plastid | 13.66 | 12.5 |
| CDX99953 | Canola | plastid | 41.53 | 11.99 |
| CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 41.53 | 11.99 |
| CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 41.53 | 11.99 |
| CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 41.53 | 11.88 |
| Solyc01g044250.1.1 | Tomato | cytosol, golgi, vacuole | 2.73 | 6.85 |
| Solyc07g009000.1.1 | Tomato | cytosol, plasma membrane, plastid | 4.37 | 6.45 |
| Solyc09g016930.1.1 | Tomato | mitochondrion | 4.37 | 6.06 |
| Solyc01g011480.1.1 | Tomato | cytosol, nucleus, plastid | 2.73 | 5.88 |
| Solyc12g027550.1.1 | Tomato | extracellular | 2.19 | 5.56 |
| Solyc10g018840.1.1 | Tomato | mitochondrion | 2.19 | 4.65 |
| Solyc05g041230.1.1 | Tomato | mitochondrion, plastid | 2.19 | 4.08 |
| Solyc12g038080.1.1 | Tomato | nucleus | 1.64 | 4.05 |
| Solyc11g045260.1.1 | Tomato | endoplasmic reticulum, golgi | 2.73 | 3.94 |
| HORVU0Hr1G029670.1 | Barley | mitochondrion, vacuole | 2.19 | 3.85 |
| HORVU0Hr1G024740.1 | Barley | mitochondrion, vacuole | 2.19 | 3.85 |
| HORVU5Hr1G004580.3 | Barley | cytosol, plasma membrane, vacuole | 5.46 | 3.79 |
| PGSC0003DMT400004386 | Potato | mitochondrion | 4.37 | 3.42 |
| AGP50740 | Barley | plastid | 5.46 | 2.83 |
| CAA34013 | Rice | plasma membrane | 5.46 | 2.83 |
| Zm00001d000260_P001 | Maize | plastid | 5.46 | 2.83 |
| TraesCS3D01G523300.1 | Wheat | extracellular, plasma membrane, vacuole | 1.64 | 1.94 |
| TraesCS5D01G007900.1 | Wheat | extracellular, plasma membrane, vacuole | 1.64 | 1.94 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009521 | GO:GO:0009579 |
| GO:GO:0009767 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | InterPro:IPR037232 | UniProt:K4AVL5 | InterPro:NADH_quin_OxRdtase_su_C/D-like |
| PFAM:PF00421 | InterPro:PS_II_antenna-like_sf | InterPro:PS_antenna-like | PANTHER:PTHR33180 | PANTHER:PTHR33180:SF4 | SUPFAM:SSF143243 |
| SUPFAM:SSF161077 | EnsemblPlantsGene:Solyc01g056470.1 | EnsemblPlants:Solyc01g056470.1.1 | TMHMM:TMhelix | UniParc:UPI000276355D | : |
Description
No Description!
Coordinates
chr1:+:54316419..54317187
Molecular Weight (calculated)
21164.9 Da
IEP (calculated)
8.131
GRAVY (calculated)
0.256
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPWIPEEYF PFFGYILKDR NKMSIILSIH LFLLGTGEGW IVSVDDLEHI IGGHIWLGFI CILGGIWSIV TQPFARVRRA LMWFGEAYLF YSFGDLAFFG
101: FIACWKMKRD LTNKSQGLAF HCCHFYVYGY NNLRSQCAYD VAPSGLLASM YHLTRIEDGV AQPEELCIKV FASKRNHRIP SVF
101: FIACWKMKRD LTNKSQGLAF HCCHFYVYGY NNLRSQCAYD VAPSGLLASM YHLTRIEDGV AQPEELCIKV FASKRNHRIP SVF
001: MQGTLSVWLA KRGLVHRSLG FDYQGIETLQ IKPEDWHSIA VILYVYGYNY LRSQCAYDVA PGGLLASVYH LTRIEYGVNQ AEEVCIKVFT HRSNPRIPSV
101: FWVWKSTDFQ ERESYDMLGI TYDSHPRLKR ILMPESWIGW PLRKDYIAPN FYEIQDAY
101: FWVWKSTDFQ ERESYDMLGI TYDSHPRLKR ILMPESWIGW PLRKDYIAPN FYEIQDAY
Arabidopsis Description
NDHJNAD(P)H-quinone oxidoreductase subunit J, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56754]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.