Factsheet for TraesCS5D01G007900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	99.35	99.35
TraesCS2D01G573000.1	Wheat	plastid	10.97	12.59
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	7.74	11.54
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	7.74	11.54
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	8.39	9.85
TraesCS2D01G572900.1	Wheat	plastid	8.39	9.03
PGSC0003DMT400004386	Potato	mitochondrion	13.55	8.97
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	11.61	6.82
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	7.1	6.11
Zm00001d000260_P001	Maize	plastid	10.97	4.82
AGP50740	Barley	plastid	10.97	4.82
CAA34013	Rice	plasma membrane	10.97	4.82
ATCG00280.1	Thale cress	mitochondrion	14.19	4.65
Solyc10g047410.1.1	Tomato	nucleus	6.45	3.36
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	13.55	3.31
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	13.55	3.31
CDX99953	Canola	plastid	13.55	3.31
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	13.55	3.28
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	1.94	1.64

Protein Annotations

EnsemblPlants:TraesCS5D01G007900.1	EnsemblPlantsGene:TraesCS5D01G007900	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	PFAM:PF00124
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF81483	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:6177829..6178296

Molecular Weight (calculated)

17267.7 Da

IEP (calculated)

4.438

GRAVY (calculated)

0.168

Length

155 amino acids

Sequence
(BLAST)

001: MMGVAGVLGA ALLCAIHGAT VENTLFEDGD GANTFRAFNP TQAEETYSMV TANRFWSQIF GVAFSNKRWL HFFMLFVPVT GLWMSAIGVV GLALNLRAYD
101: FVSQEIRAAE DPEFETFYTK NILLNEGIRA WMAAQDQPHE NLIFPEEVLP RGNAL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.