CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA34013	Rice	plasma membrane	99.43	99.43
Zm00001d000260_P001	Maize	plastid	99.15	99.15
PGSC0003DMT400004386	Potato	mitochondrion	56.09	84.62
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	60.06	80.3
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	15.86	53.85
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	15.86	53.85
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	4.53	17.02
HORVU5Hr1G082910.1	Barley	plastid	3.12	13.92
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	5.1	11.61
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	4.82	10.97
AGP50741	Barley	plastid	7.37	5.5
ATCG00280.1	Thale cress	mitochondrion	7.37	5.5
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	2.83	5.46
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	2.83	4.67
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	6.52	3.63
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	6.52	3.63
CDX99953	Canola	plastid	6.52	3.63
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	6.52	3.59
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	1.7	3.33
Solyc10g047410.1.1	Tomato	nucleus	2.55	3.02

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	EntrezGene:4525151	EnsemblPlants:AGP50740	EnsemblPlantsGene:AGP50740	ProteinID:AGP50740
ProteinID:AGP50740.1	ProteinID:AMA20231.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	ENA:KC912687.1:CDS:8617..9678	HAMAP:MF_01383
PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_PsbD/D2	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8
MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	GO:S4Z1W0	UniProt:S4Z1W0	SUPFAM:SSF81483
TIGRFAMs:TIGR01152	TMHMM:TMhelix	UniParc:UPI0000132644	RefSeq:YP_874638.1	SEG:seg	:

Description

psbDphotosystem II protein D2

Coordinates

chrPt:+:8617..9678

Molecular Weight (calculated)

39559.5 Da

IEP (calculated)

5.293

GRAVY (calculated)

0.345

Length

353 amino acids

Sequence
(BLAST)

001: MTIALGRVPK EENDLFDTMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.