Factsheet for VIT_00s0396g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 6
endoplasmic reticulum 6
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	VIT_06s0004g04460.t01	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	28.33	80.95
ATCG00280.1	Thale cress	mitochondrion	90.56	34.46
CDX99953	Canola	plastid	90.56	25.71
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	90.56	25.71
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	90.56	25.71
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	90.56	25.47
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	6.11	7.1
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	6.11	7.1
OQU80575	Sorghum	extracellular, golgi, mitochondrion	2.78	5.15
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	2.22	4.26
TraesCS2D01G572900.1	Wheat	plastid	2.78	3.47
PGSC0003DMT400004386	Potato	mitochondrion	3.33	2.56
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	3.33	2.27
KRH29413	Soybean	cytosol, plastid, vacuole	1.67	2.22
AGP50740	Barley	plastid	3.33	1.7
CAA34013	Rice	plasma membrane	3.33	1.7
Zm00001d000260_P001	Maize	plastid	3.33	1.7
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	0.56	0.96
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	0.56	0.96

Protein Annotations

Gene3D:1.10.10.670	EntrezGene:100254438	wikigene:100254438	MapMan:35.1	EntrezGene:4025084	wikigene:4025084
ProteinID:ABE47530	ProteinID:ABE47530.1	ProteinID:CBI33202	ProteinID:CBI33202.3	UniProt:D7TRS6	EMBL:DQ424856
EMBL:FN596039	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009767	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872
EntrezGene:LOC100254438	wikigene:LOC100254438	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180
PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI0001BE3DB0	ArrayExpress:VIT_00s0396g00010	EnsemblPlantsGene:VIT_00s0396g00010
EnsemblPlants:VIT_00s0396g00010.t01	RefSeq:XP_002273833	RefSeq:XP_002273833.1	EntrezGene:psbC	wikigene:psbC	SEG:seg

Description

No Description!

Coordinates

chrUn:+:27320064..27321705

Molecular Weight (calculated)

19746.9 Da

IEP (calculated)

7.433

GRAVY (calculated)

0.509

Length

180 amino acids

Sequence
(BLAST)

001: MTTIFGIHLI LLGIGVFLLV FKALYFGGVY DTWAPGGLRK ITNLTLSPSV IFGYLQKSPF GGEGWIVSVD DFEDIIGGHV WLGSICILGG IWHILTKPFA
101: WARRALVWSG EAYLSYSLGA LSVFGFIACC FVWFNNTAYP SEFYGPTGPE ASQAQAFTFL VRDQRIGANV GSAQGPTWFR

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.