Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0151200-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
ATCG00280.1 | Os01t0151200-01 | AT2G28800.1 | 15988575 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d000260_P001 | Maize | plastid | 99.72 | 99.72 |
AGP50740 | Barley | plastid | 99.43 | 99.43 |
PGSC0003DMT400004386 | Potato | mitochondrion | 56.66 | 85.47 |
TraesCS3D01G523300.1 | Wheat | extracellular, plasma membrane, vacuole | 5.1 | 11.61 |
TraesCS5D01G007900.1 | Wheat | extracellular, plasma membrane, vacuole | 4.82 | 10.97 |
ATCG00280.1 | Thale cress | mitochondrion | 7.37 | 5.5 |
Solyc01g056470.1.1 | Tomato | golgi, plasma membrane | 2.83 | 5.46 |
CAA34014 | Rice | extracellular | 7.08 | 5.29 |
CDX99953 | Canola | plastid | 6.52 | 3.63 |
CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 6.52 | 3.63 |
CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 6.52 | 3.63 |
CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 6.52 | 3.59 |
VIT_00s0396g00010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 1.7 | 3.33 |
Solyc10g047410.1.1 | Tomato | nucleus | 2.55 | 3.02 |
Protein Annotations
MapMan:1.1.1.2.1.2 | Gene3D:1.20.85.10 | EntrezGene:3131412 | ProteinID:AAS46108.1 | ProteinID:AJC99298.1 | ProteinID:AJC99387.1 |
ProteinID:BAB89777.1 | EnsemblPlants:CAA34013 | EnsemblPlantsGene:CAA34013 | ProteinID:CAA34013 | ProteinID:CAA34013.1 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
GO:GO:0009507 | GO:GO:0009521 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
GO:GO:0009767 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
GO:GO:0016168 | GO:GO:0016491 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | GO:GO:0045156 |
GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036854 | HAMAP:MF_01383 | RefSeq:NP_039366.1 | UniProt:P0C437 |
PFAM:PF00124 | PRINTS:PR00256 | ScanProsite:PS00244 | InterPro:PSII_PsbD/D2 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF8 |
MetaCyc:PWY-101 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | UniProt:Q7F4T1 | SUPFAM:SSF81483 | TIGRFAMs:TIGR01152 |
TMHMM:TMhelix | UniParc:UPI000000173D | SEG:seg | : | : | : |
Description
psbDPSII D2 protein
Coordinates
chrPt:+:8900..9961
Molecular Weight (calculated)
39575.6 Da
IEP (calculated)
5.293
GRAVY (calculated)
0.363
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIALGRVTK EENDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Arabidopsis Description
PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.