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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0151200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATCG00280.1 Os01t0151200-01 AT2G28800.1 15988575
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d000260_P001 Maize plastid 99.72 99.72
AGP50740 Barley plastid 99.43 99.43
PGSC0003DMT400004386 Potato mitochondrion 56.66 85.47
TraesCS3D01G523300.1 Wheat extracellular, plasma membrane, vacuole 5.1 11.61
TraesCS5D01G007900.1 Wheat extracellular, plasma membrane, vacuole 4.82 10.97
ATCG00280.1 Thale cress mitochondrion 7.37 5.5
Solyc01g056470.1.1 Tomato golgi, plasma membrane 2.83 5.46
CAA34014 Rice extracellular 7.08 5.29
CDX99953 Canola plastid 6.52 3.63
CDY29457 Canola endoplasmic reticulum, golgi, plasma membrane 6.52 3.63
CDY29458 Canola endoplasmic reticulum, golgi, plasma membrane 6.52 3.63
CDY39486 Canola endoplasmic reticulum, golgi, mitochondrion 6.52 3.59
VIT_00s0396g00010.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 1.7 3.33
Solyc10g047410.1.1 Tomato nucleus 2.55 3.02
Protein Annotations
MapMan:1.1.1.2.1.2Gene3D:1.20.85.10EntrezGene:3131412ProteinID:AAS46108.1ProteinID:AJC99298.1ProteinID:AJC99387.1
ProteinID:BAB89777.1EnsemblPlants:CAA34013EnsemblPlantsGene:CAA34013ProteinID:CAA34013ProteinID:CAA34013.1GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005506GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009055
GO:GO:0009507GO:GO:0009521GO:GO:0009523GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009767GO:GO:0009772GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021
GO:GO:0016168GO:GO:0016491GO:GO:0018298GO:GO:0019538GO:GO:0019684GO:GO:0045156
GO:GO:0046872GO:GO:0055114InterPro:IPR036854HAMAP:MF_01383RefSeq:NP_039366.1UniProt:P0C437
PFAM:PF00124PRINTS:PR00256ScanProsite:PS00244InterPro:PSII_PsbD/D2PANTHER:PTHR33149PANTHER:PTHR33149:SF8
MetaCyc:PWY-101InterPro:Photo_II_D1/D2_sfInterPro:Photo_RC_L/MUniProt:Q7F4T1SUPFAM:SSF81483TIGRFAMs:TIGR01152
TMHMM:TMhelixUniParc:UPI000000173DSEG:seg:::
Description
psbDPSII D2 protein
Coordinates
chrPt:+:8900..9961
Molecular Weight (calculated)
39575.6 Da
IEP (calculated)
5.293
GRAVY (calculated)
0.363
Length
353 amino acids
Sequence
(BLAST)
001: MTIALGRVTK EENDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)
001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Arabidopsis Description
PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.