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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 3
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
extracellular: 18986194
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
msms PMID: 18986194 doi
YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa
Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0151200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATCG00280.1 Os01t0151200-01 AT2G28800.1 15988575
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AGP50741 Barley plastid 98.73 98.73
GRMZM5G856777_P01 Maize plastid 97.67 97.67
Bra041123.1-P Field mustard plastid 16.07 97.44
ATCG00280.1 Thale cress mitochondrion 96.41 96.41
TraesCS2A01G073900.1 Wheat plastid 15.43 93.59
TraesCS4A01G153000.1 Wheat plastid 14.8 89.74
TraesCS2D01G573000.1 Wheat plastid 25.37 88.89
TraesCS4D01G155200.1 Wheat cytosol, golgi, plastid 24.74 88.64
HORVU5Hr1G082910.1 Barley plastid 14.8 88.61
TraesCS7B01G091500.1 Wheat cytosol, golgi, plastid 14.38 87.18
KRH57644 Soybean extracellular, golgi 10.78 79.69
KXG39316 Sorghum endoplasmic reticulum, plasma membrane, vacuole 58.77 72.97
CDY29458 Canola endoplasmic reticulum, golgi, plasma membrane 85.41 63.72
CDY29457 Canola endoplasmic reticulum, golgi, plasma membrane 85.41 63.72
CDX99953 Canola plastid 85.41 63.72
CDY39486 Canola endoplasmic reticulum, golgi, mitochondrion 85.41 63.12
KRG92989 Soybean plastid 11.84 37.58
CAA34013 Rice plasma membrane 5.29 7.08
Protein Annotations
MapMan:1.1.1.2.1.4Gene3D:1.10.10.670EntrezGene:3131411ProteinID:AAS46109.1ProteinID:ADD62822.1ProteinID:AJC99299.1
ProteinID:AJC99388.1EnsemblPlants:CAA34014EnsemblPlantsGene:CAA34014ProteinID:CAA34014ProteinID:CAA34014.1UniProt:E9KIM9
GO:GO:0000312GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006091GO:GO:0006464GO:GO:0008137
GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009521GO:GO:0009523GO:GO:0009535
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009767GO:GO:0009772GO:GO:0009987
GO:GO:0015977GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0016491
GO:GO:0016984GO:GO:0018298GO:GO:0019538GO:GO:0019684GO:GO:0045156GO:GO:0046872
GO:GO:0048038GO:GO:0051536GO:GO:0051539GO:GO:0055114HAMAP:MF_01496RefSeq:NP_039367.1
UniProt:P0C367PFAM:PF00421InterPro:PSII_PsbCInterPro:PS_II_antenna-like_sfInterPro:PS_antenna-likePANTHER:PTHR33180
PANTHER:PTHR33180:SF4SUPFAM:SSF161077TIGRFAMs:TIGR01153TMHMM:TMhelixUniParc:UPI0000132631SEG:seg
Description
psbCPSII 43kDa protein
Coordinates
chrPt:+:9909..11330
Molecular Weight (calculated)
52079.0 Da
IEP (calculated)
7.230
GRAVY (calculated)
0.274
Length
473 amino acids
Sequence
(BLAST)
001: MKILYSLRRF YHVETLFNGT FVLAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVLDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGI GAFLLVLKAL YFGGIYDTWA PGGGDVRKIT
201: NLTLSPGVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GFICVFGGIW HILTKPFAWA RRAFVWSGEA YLSYSLGALS VFGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLATSH FVLGFFFFVG HLWHAGRARA AAAGFEKGID RDLEPVLYMT PLN
Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)
001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN
Arabidopsis Description
PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.