Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 3
- plasma membrane 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
18986194
plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0151200-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
ATCG00280.1 | Os01t0151200-01 | AT2G28800.1 | 15988575 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AGP50741 | Barley | plastid | 98.73 | 98.73 |
GRMZM5G856777_P01 | Maize | plastid | 97.67 | 97.67 |
Bra041123.1-P | Field mustard | plastid | 16.07 | 97.44 |
ATCG00280.1 | Thale cress | mitochondrion | 96.41 | 96.41 |
TraesCS2A01G073900.1 | Wheat | plastid | 15.43 | 93.59 |
TraesCS4A01G153000.1 | Wheat | plastid | 14.8 | 89.74 |
TraesCS2D01G573000.1 | Wheat | plastid | 25.37 | 88.89 |
TraesCS4D01G155200.1 | Wheat | cytosol, golgi, plastid | 24.74 | 88.64 |
HORVU5Hr1G082910.1 | Barley | plastid | 14.8 | 88.61 |
TraesCS7B01G091500.1 | Wheat | cytosol, golgi, plastid | 14.38 | 87.18 |
KRH57644 | Soybean | extracellular, golgi | 10.78 | 79.69 |
KXG39316 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 58.77 | 72.97 |
CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 85.41 | 63.72 |
CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 85.41 | 63.72 |
CDX99953 | Canola | plastid | 85.41 | 63.72 |
CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 85.41 | 63.12 |
KRG92989 | Soybean | plastid | 11.84 | 37.58 |
CAA34013 | Rice | plasma membrane | 5.29 | 7.08 |
Protein Annotations
MapMan:1.1.1.2.1.4 | Gene3D:1.10.10.670 | EntrezGene:3131411 | ProteinID:AAS46109.1 | ProteinID:ADD62822.1 | ProteinID:AJC99299.1 |
ProteinID:AJC99388.1 | EnsemblPlants:CAA34014 | EnsemblPlantsGene:CAA34014 | ProteinID:CAA34014 | ProteinID:CAA34014.1 | UniProt:E9KIM9 |
GO:GO:0000312 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008137 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009521 | GO:GO:0009523 | GO:GO:0009535 |
GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009767 | GO:GO:0009772 | GO:GO:0009987 |
GO:GO:0015977 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0016491 |
GO:GO:0016984 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | GO:GO:0045156 | GO:GO:0046872 |
GO:GO:0048038 | GO:GO:0051536 | GO:GO:0051539 | GO:GO:0055114 | HAMAP:MF_01496 | RefSeq:NP_039367.1 |
UniProt:P0C367 | PFAM:PF00421 | InterPro:PSII_PsbC | InterPro:PS_II_antenna-like_sf | InterPro:PS_antenna-like | PANTHER:PTHR33180 |
PANTHER:PTHR33180:SF4 | SUPFAM:SSF161077 | TIGRFAMs:TIGR01153 | TMHMM:TMhelix | UniParc:UPI0000132631 | SEG:seg |
Description
psbCPSII 43kDa protein
Coordinates
chrPt:+:9909..11330
Molecular Weight (calculated)
52079.0 Da
IEP (calculated)
7.230
GRAVY (calculated)
0.274
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MKILYSLRRF YHVETLFNGT FVLAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVLDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGI GAFLLVLKAL YFGGIYDTWA PGGGDVRKIT
201: NLTLSPGVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GFICVFGGIW HILTKPFAWA RRAFVWSGEA YLSYSLGALS VFGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLATSH FVLGFFFFVG HLWHAGRARA AAAGFEKGID RDLEPVLYMT PLN
101: PGGEVLDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGI GAFLLVLKAL YFGGIYDTWA PGGGDVRKIT
201: NLTLSPGVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GFICVFGGIW HILTKPFAWA RRAFVWSGEA YLSYSLGALS VFGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLATSH FVLGFFFFVG HLWHAGRARA AAAGFEKGID RDLEPVLYMT PLN
001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN
Arabidopsis Description
PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.