CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KRH24811	AT2G28800.1	15988575
ATCG00280.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33956	Sorghum	cytosol, golgi, plastid	78.12	64.1
Bra041123.1-P	Field mustard	plastid	76.56	62.82
TraesCS2A01G073900.1	Wheat	plastid	73.44	60.26
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	68.75	56.41
TraesCS4A01G153000.1	Wheat	plastid	68.75	56.41
HORVU5Hr1G082910.1	Barley	plastid	68.75	55.7
KXG38767	Sorghum	plastid	70.31	55.56
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	73.44	35.61
TraesCS2D01G573000.1	Wheat	plastid	67.19	31.85
KRG92989	Soybean	plastid	70.31	30.2
ATCG00280.1	Thale cress	mitochondrion	82.81	11.21
CAA34014	Rice	extracellular	79.69	10.78
GRMZM5G856777_P01	Maize	plastid	78.12	10.57
AGP50741	Barley	plastid	76.56	10.36
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	82.81	8.36
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	82.81	8.36
CDX99953	Canola	plastid	82.81	8.36
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	82.81	8.28
KRH29413	Soybean	cytosol, plastid, vacuole	12.5	5.93

Protein Annotations

MapMan:35.2	UniProt:A0A0R0JRW0	EMBL:ACUP02002873	EnsemblPlantsGene:GLYMA_05G074900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
EnsemblPlants:KRH57644	ProteinID:KRH57644	ProteinID:KRH57644.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like
PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI0006ED5885	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:8948265..8948703

Molecular Weight (calculated)

7078.6 Da

IEP (calculated)

7.810

GRAVY (calculated)

0.500

Length

64 amino acids

Sequence
(BLAST)

1: MFFGVGLLLD VSPRSWLATS HFVLGFFLFV GHLWHAGRAR AAAAGFEKGI DRDFEPVLSM TPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.