CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, plastid

Predictor Summary:

nucleus 1
plastid 2
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KXG31875	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	93.59	93.59
TraesCS2A01G073900.1	Wheat	plastid	89.74	89.74
TraesCS4A01G153000.1	Wheat	plastid	87.18	87.18
HORVU5Hr1G082910.1	Barley	plastid	85.9	84.81
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	84.62	84.62
KXG38767	Sorghum	plastid	87.18	83.95
KRH57644	Soybean	extracellular, golgi	64.1	78.12
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	84.62	50.0
TraesCS2D01G573000.1	Wheat	plastid	83.33	48.15
KRG92989	Soybean	plastid	55.13	28.86
AGP50741	Barley	plastid	93.59	15.43
ATCG00280.1	Thale cress	mitochondrion	91.03	15.01
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	65.38	13.39
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	76.92	9.46
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	76.92	9.46
CDX99953	Canola	plastid	76.92	9.46
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	76.92	9.38
OQU80575	Sorghum	extracellular, golgi, mitochondrion	5.13	4.12

Protein Annotations

MapMan:35.1	UniProt:A0A1B6Q7R5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521
GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlants:KXG33956	ProteinID:KXG33956
ProteinID:KXG33956.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
EnsemblPlantsGene:SORBI_3003G395800	SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI00081AB7DF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:70612667..70613190

Molecular Weight (calculated)

8552.2 Da

IEP (calculated)

6.967

GRAVY (calculated)

0.240

Length

78 amino acids

Sequence
(BLAST)

1: MTHAPLGSLT SVDGVATEIN AVNYVSPRSW LATSHFVLGF FFFVGHLWHA GRARAAAAGF EKGIDRDLEP FLYMTPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.