Factsheet for Bra041123.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, plastid
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035669.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Bra035669.1-P	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G073900.1	Wheat	plastid	96.15	96.15
KXG33956	Sorghum	cytosol, golgi, plastid	93.59	93.59
TraesCS4A01G153000.1	Wheat	plastid	92.31	92.31
HORVU5Hr1G082910.1	Barley	plastid	92.31	91.14
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	89.74	89.74
KXG38767	Sorghum	plastid	88.46	85.19
KRH57644	Soybean	extracellular, golgi	62.82	76.56
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	91.03	53.79
TraesCS2D01G573000.1	Wheat	plastid	87.18	50.37
KRG92989	Soybean	plastid	53.85	28.19
AGP50741	Barley	plastid	100.0	16.49
CAA34014	Rice	extracellular	97.44	16.07
GRMZM5G856777_P01	Maize	plastid	96.15	15.86
ATCG00280.1	Thale cress	mitochondrion	94.87	15.64
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	78.21	9.62
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	78.21	9.62
CDX99953	Canola	plastid	78.21	9.62
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	78.21	9.53

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra041123	EnsemblPlants:Bra041123.1	EnsemblPlants:Bra041123.1-P	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
UniProt:M4FJ43	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI000253ED30	SEG:seg	:	:

Description

ATCG00280 (E=1e-023) PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.

Coordinates

chrScaffold000635:+:1405..1641

Molecular Weight (calculated)

8488.1 Da

IEP (calculated)

7.862

GRAVY (calculated)

0.192

Length

78 amino acids

Sequence
(BLAST)

1: MTHAPLGSLN SVGGVATEIN AVNYVSPRSW LSTSHFVLGF FFFVGHLWHA GRARAAAAGF EKGIDRDLEP VLYMNPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.