Factsheet for TraesCS4A01G153000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	92.31	92.31
TraesCS2A01G073900.1	Wheat	plastid	89.74	89.74
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	88.46	88.46
KXG33956	Sorghum	cytosol, golgi, plastid	87.18	87.18
HORVU5Hr1G082910.1	Barley	plastid	84.62	83.54
KXG38767	Sorghum	plastid	80.77	77.78
KRH57644	Soybean	extracellular, golgi	56.41	68.75
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	87.18	51.52
KRG92989	Soybean	plastid	48.72	25.5
CAA34014	Rice	extracellular	89.74	14.8
GRMZM5G856777_P01	Maize	plastid	88.46	14.59
ATCG00280.1	Thale cress	mitochondrion	87.18	14.38
CDX99953	Canola	plastid	70.51	8.68
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	70.51	8.68
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	70.51	8.68
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	70.51	8.59

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016168	GO:GO:0019684	PFAM:PF00421
InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4A01G153000	EnsemblPlants:TraesCS4A01G153000.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:309489347..309489583

Molecular Weight (calculated)

8627.4 Da

IEP (calculated)

7.951

GRAVY (calculated)

0.259

Length

78 amino acids

Sequence
(BLAST)

1: MTHAPLGSLN SVGGIATEIN AVNYVSPRSW LSTSHFVLGF FFFVGHLWHA GRARAAIAGF EKGIDHYLEH ILYMNPLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.