Factsheet for GRMZM5G856777_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
plastid: 22833285
plastid: 23198870
mitochondrion: 27297264

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008625_P001
Zm00001d039852_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Zm00001d008625_P001	AT2G28800.1	15988575
ATCG00280.1	Zm00001d039852_P001	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA34014	Rice	extracellular	97.67	97.67
AGP50741	Barley	plastid	97.25	97.25
Bra041123.1-P	Field mustard	plastid	15.86	96.15
ATCG00280.1	Thale cress	mitochondrion	95.14	95.14
TraesCS2A01G073900.1	Wheat	plastid	15.22	92.31
TraesCS4A01G153000.1	Wheat	plastid	14.59	88.46
TraesCS2D01G573000.1	Wheat	plastid	24.95	87.41
HORVU5Hr1G082910.1	Barley	plastid	14.59	87.34
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	24.1	86.36
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	14.16	85.9
KRH57644	Soybean	extracellular, golgi	10.57	78.12
KXG39316	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	58.14	72.18
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	84.57	63.09
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	84.57	63.09
CDX99953	Canola	plastid	84.57	63.09
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	84.57	62.5
KRG92989	Soybean	plastid	11.63	36.91
Zm00001d000260_P001	Maize	plastid	5.29	7.08

Protein Annotations

MapMan:1.1.1.2.1.4	Gene3D:1.10.10.670	EntrezGene:845201	ProteinID:CAA60271.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0019684	GO:GO:0042651	GO:GO:0045156	GO:GO:0046872	EnsemblPlantsGene:GRMZM5G856777	EnsemblPlants:GRMZM5G856777_P01
EnsemblPlants:GRMZM5G856777_T01	HAMAP:MF_01496	UniProt:P48187	PFAM:PF00421	InterPro:PSII_PsbC	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TIGRFAMs:TIGR01153	TMHMM:TMhelix
UniParc:UPI000013262D	SEG:seg	:	:	:	:

Description

psbCPhotosystem II CP43 reaction center protein [Source:UniProtKB/Swiss-Prot;Acc:P48187]

Coordinates

chrPt:+:6392..12986

Molecular Weight (calculated)

51902.7 Da

IEP (calculated)

7.044

GRAVY (calculated)

0.247

Length

473 amino acids

Sequence
(BLAST)

001: MKILYSLRRF YHVETLFNGT FVLAGRDQET TGFPWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: SGGEVLDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WQDRNKMTTL LGIHLILLGL GAFLLVLKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPGVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICVLGGIW HILTKPFAWA RRAFVWSGEA YLSYSLGALS VFGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDGQPWQER RSGEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLATSH FVLGFFFFVG HLWHAGRARA AAAGFEKGID RDLEPVVYMT PLN

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.