Factsheet for TraesCS2D01G573000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

golgi 1
mitochondrion 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, nucleus, plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 22056444

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041123.1-P	Field mustard	plastid	50.37	87.18
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	82.22	84.09
KXG33956	Sorghum	cytosol, golgi, plastid	48.15	83.33
KXG38767	Sorghum	plastid	48.15	80.25
TraesCS7B01G091500.1	Wheat	cytosol, golgi, plastid	45.19	78.21
KRH57644	Soybean	extracellular, golgi	31.85	67.19
KRG92989	Soybean	plastid	31.85	28.86
CAA34014	Rice	extracellular	88.89	25.37
ATCG00280.1	Thale cress	mitochondrion	88.15	25.16
GRMZM5G856777_P01	Maize	plastid	87.41	24.95
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	65.93	14.04
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	65.93	14.04
CDX99953	Canola	plastid	65.93	14.04
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	65.93	13.91
TraesCS2D01G572900.1	Wheat	plastid	13.33	12.5
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	12.59	10.97
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	11.85	10.32

Protein Annotations

Gene3D:1.10.10.670	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016168	GO:GO:0019684
PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	SUPFAM:SSF161077	EnsemblPlantsGene:TraesCS2D01G573000
EnsemblPlants:TraesCS2D01G573000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:638424559..638425053

Molecular Weight (calculated)

15320.2 Da

IEP (calculated)

9.088

GRAVY (calculated)

-0.376

Length

135 amino acids

Sequence
(BLAST)

001: MRSPTGEVIF GGETMRFWDL RAPWLEPLRG PNGLDLSRLK KDIQPWQERR SAEYMTHAPL GSLNSVGDVA TETNAVNYVS PRSWLSTSHF VLGFFFFVGH
101: LWHAGRARAA AAGFEKGIDR DLEPPSHSFL FMKER

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.