Factsheet for TraesCS2D01G572900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

plastid: 22056444
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00280.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	27.78	42.55
TraesCS4D01G155200.1	Wheat	cytosol, golgi, plastid	12.5	13.64
TraesCS2D01G573000.1	Wheat	plastid	12.5	13.33
Solyc12g038080.1.1	Tomato	nucleus	4.86	9.46
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	9.03	8.39
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	9.03	8.39
ATCG00280.1	Thale cress	mitochondrion	15.28	4.65
Solyc09g016930.1.1	Tomato	mitochondrion	3.47	3.79
CDX99953	Canola	plastid	14.58	3.31
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	14.58	3.31
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	14.58	3.31
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	14.58	3.28
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	3.47	2.78

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016168	GO:GO:0019684	PFAM:PF00421
InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2D01G572900	EnsemblPlants:TraesCS2D01G572900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:638423740..638424178

Molecular Weight (calculated)

15829.6 Da

IEP (calculated)

6.340

GRAVY (calculated)

0.643

Length

144 amino acids

Sequence
(BLAST)

001: MNLFEVAHFV PEKPMYEQGL ILLPHLATLG WGVGPGGVLD TFPYFVSGVL HLISSAVLGF GGLYHALLGP ETLEESFPFF GYVWKDRNKM TTILGIHLIL
101: LGLGAFLLVL KALYFGGVYD TWAPGGDVRK ITNLTLSPLY LVIY

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.