Factsheet for HORVU5Hr1G060530.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole, cytosol

Predictor Summary:

golgi 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, vacuole
Any Predictor:	cytosol, golgi, vacuole
MultiLoc:	golgi
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G572900.1	Wheat	plastid	42.55	27.78
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	9.57	8.65
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	9.57	8.65
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	19.15	6.82
HORVU5Hr1G082910.1	Barley	plastid	5.32	6.33
AGP50740	Barley	plastid	17.02	4.53
Solyc12g038080.1.1	Tomato	nucleus	3.19	4.05
AGP50741	Barley	plastid	11.7	2.33
ATCG00280.1	Thale cress	mitochondrion	11.7	2.33
Solyc09g016930.1.1	Tomato	mitochondrion	3.19	2.27
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	4.26	2.22
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	4.26	1.87
CDX99953	Canola	plastid	8.51	1.26
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	8.51	1.26
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	8.51	1.26
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	8.51	1.25

Protein Annotations

MapMan:35.1	UniProt:A0A287REY7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521
GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlantsGene:HORVU5Hr1G060530	EnsemblPlants:HORVU5Hr1G060530.1
PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077
UniParc:UPI000B460EBD	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:474109399..474109917

Molecular Weight (calculated)

10297.7 Da

IEP (calculated)

5.477

GRAVY (calculated)

0.507

Length

94 amino acids

Sequence
(BLAST)

1: MNLFEVAHFV PEKPMYEQGL ILLPHLATLG WGVGPGGEVL DTFPYFVSGV LHLISSAVLG FGGIYHALLG PETQIKESVD LIISYLKGKL FELR

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.