Factsheet for HORVU0Hr1G024740.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole

Predictor Summary:

mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	100.0	100.0
PGSC0003DMT400004386	Potato	mitochondrion	77.88	34.62
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	50.96	20.08
AGP50740	Barley	plastid	53.85	15.86
HORVU5Hr1G082910.1	Barley	plastid	8.65	11.39
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	8.65	9.57
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	12.5	8.39
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	11.54	7.74
ATCG00280.1	Thale cress	mitochondrion	13.46	2.96
AGP50741	Barley	plastid	12.5	2.75
Solyc10g047410.1.1	Tomato	nucleus	6.73	2.35
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	3.85	2.19
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	10.58	1.74
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	10.58	1.74
CDX99953	Canola	plastid	10.58	1.74
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	10.58	1.72
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	2.88	1.4
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	0.96	0.56

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	UniProt:A0A287E9Y0	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	EnsemblPlantsGene:HORVU0Hr1G024740	EnsemblPlants:HORVU0Hr1G024740.1
InterPro:IPR036854	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF7
InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI000B474E0C	SEG:seg

Description

No Description!

Coordinates

chrchrUn:+:127824686..127824997

Molecular Weight (calculated)

11405.9 Da

IEP (calculated)

6.785

GRAVY (calculated)

0.717

Length

104 amino acids

Sequence
(BLAST)

001: MLRQFELARS VQLRPYNAIS FSGPIAVFVS VFLIYPLGQS GWFFAPSFGV AAIFRFILFF QGFHNWTLNP FHMMGVAGVL GAALLCAIHG ATVENTLFED
101: GDGA

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.