Factsheet for HORVU2Hr1G062030.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50741	Barley	plastid	97.2	43.97
ATCG00280.1	Thale cress	mitochondrion	94.39	42.71
CDX99953	Canola	plastid	94.39	31.86
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	94.39	31.86
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	94.39	31.86
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	94.39	31.56
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	11.21	28.24
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	1.87	4.26
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	4.67	3.79
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	1.4	2.88
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	1.4	2.88
AGP50740	Barley	plastid	4.67	2.83
HORVU5Hr1G082910.1	Barley	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.10.670	MapMan:35.1	UniProt:A0A287I632	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	EnsemblPlantsGene:HORVU2Hr1G062030
EnsemblPlants:HORVU2Hr1G062030.1	PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4
SUPFAM:SSF161077	TMHMM:TMhelix	UniParc:UPI000B470B65	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:419356666..419358013

Molecular Weight (calculated)

23552.5 Da

IEP (calculated)

5.644

GRAVY (calculated)

0.419

Length

214 amino acids

Sequence
(BLAST)

001: MTTILGIHLI LLGLGAFLLV LKDLYFGSVY DTWAPGGDVR KITNLTLSPS VIFSYLLKSP FGGEGWIVSV DDLEDIIGGH VWLGFICVFG GIWHILTTPF
101: AWARRAFVWS GEAYLSYSLA ALSVFGFIAC CFVWFNNTAY PSEFYGPTGP EASQAQAFTF IVRDQRLGAN VGTAQGPTGL GKYLMRSPTG EVIFGGETMR
201: FWDLRAPWLE PLRG

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.