Factsheet for HORVU5Hr1G004580.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004386	Potato	mitochondrion	72.35	81.62
AGP50740	Barley	plastid	80.3	60.06
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	20.08	50.96
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	20.08	50.96
HORVU5Hr1G060530.1	Barley	cytosol, golgi, vacuole	6.82	19.15
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	7.2	12.26
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	6.82	11.61
HORVU5Hr1G082910.1	Barley	plastid	3.41	11.39
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	3.79	5.46
HORVU2Hr1G062030.1	Barley	endoplasmic reticulum, golgi, vacuole	3.79	4.67
AGP50741	Barley	plastid	8.33	4.65
ATCG00280.1	Thale cress	mitochondrion	8.33	4.65
Solyc10g047410.1.1	Tomato	nucleus	4.92	4.36
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	2.27	3.33
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	7.2	3.0
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	7.2	3.0
CDX99953	Canola	plastid	7.2	3.0
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	7.2	2.97

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	UniProt:A0A287Q826	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	EnsemblPlantsGene:HORVU5Hr1G004580	EnsemblPlants:HORVU5Hr1G004580.3
InterPro:IPR036854	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8
InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI000B479C6F	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:8239301..8241729

Molecular Weight (calculated)

29474.3 Da

IEP (calculated)

5.170

GRAVY (calculated)

0.394

Length

264 amino acids

Sequence
(BLAST)

001: MTIALGRVPK EENDLFDTMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAEVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNGISFSGP IDVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFFQ

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.