Factsheet for Solyc10g047410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	9.4	44.44
Solyc10g017940.1.1	Tomato	plastid	21.14	31.5
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	18.46	30.05
ATCG00280.1	Thale cress	mitochondrion	42.95	27.06
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	42.28	19.87
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	42.28	19.87
CDX99953	Canola	plastid	42.28	19.87
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	42.28	19.69
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	3.69	7.1
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	2.35	6.73
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	2.35	6.73
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	3.36	6.45
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	4.36	4.92
Solyc10g018840.1.1	Tomato	mitochondrion	1.34	4.65
PGSC0003DMT400004386	Potato	mitochondrion	3.36	4.27
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	1.01	4.11
Solyc12g038080.1.1	Tomato	nucleus	1.01	4.05
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	1.01	3.53
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	1.34	3.15
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	1.01	3.06
Solyc12g027550.1.1	Tomato	extracellular	0.67	2.78
Zm00001d000260_P001	Maize	plastid	3.02	2.55
AGP50740	Barley	plastid	3.02	2.55
CAA34013	Rice	plasma membrane	3.02	2.55
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	1.01	2.42
Solyc09g016930.1.1	Tomato	mitochondrion	1.01	2.27

Protein Annotations

Gene3D:1.10.645.20	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016651	GO:GO:0018298	GO:GO:0019538
GO:GO:0019684	GO:GO:0048038	GO:GO:0051287	GO:GO:0055114	InterPro:IPR038290	UniProt:K4D003
InterPro:NADH_Q_OxRdtase_suD	InterPro:NADH_Q_OxRdtase_suD_sf	InterPro:NiFe-Hase_large	PFAM:PF00346	PFAM:PF00421	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	SUPFAM:SSF56762	EnsemblPlantsGene:Solyc10g047410.1
EnsemblPlants:Solyc10g047410.1.1	TMHMM:TMhelix	UniParc:UPI0002769D58	:	:	:

Description

No Description!

Coordinates

chr10:+:40795230..40797849

Molecular Weight (calculated)

34050.0 Da

IEP (calculated)

9.730

GRAVY (calculated)

0.314

Length

298 amino acids

Sequence
(BLAST)

001: MSFYEIAGLF IKRFPWRWKI RPPGFVNLQI LPQLVRRMKL ADNMTILGSI GAFILVFKAL YFGGVYDTWA PGGGDVRKIT NLTLSLSIIF GYILKSPFGG
101: ERWIVSVDDL EDIIGGHVWL GFICILCRIW HILTKPFAWA RRTLLWSGEA YLSYSLGALA VFGFIACCFV WFNNTNLFLV VLEQLGDSLE DIRGSTSGGN
201: MLGPVRKHIY SDSDREMHWS TDVYHAPEFI YGNVHLLPKT SHLWILLRGP CRYSPFYLSI LVTGGVYKTR ERIHRRIADQ QLLAIPASCR RVVVRILI

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.