Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g066110.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00280.1 | Solyc11g066110.1.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0396g00010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 80.95 | 28.33 |
| Solyc10g017940.1.1 | Tomato | plastid | 47.62 | 15.0 |
| ATCG00280.1 | Thale cress | mitochondrion | 79.37 | 10.57 |
| Solyc10g047410.1.1 | Tomato | nucleus | 44.44 | 9.4 |
| Solyc01g056470.1.1 | Tomato | golgi, plasma membrane | 25.4 | 8.74 |
| CDX99953 | Canola | plastid | 79.37 | 7.89 |
| CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 79.37 | 7.89 |
| CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 79.37 | 7.89 |
| CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 79.37 | 7.81 |
| Solyc01g044250.1.1 | Tomato | cytosol, golgi, vacuole | 4.76 | 4.11 |
| Solyc07g009000.1.1 | Tomato | cytosol, plasma membrane, plastid | 6.35 | 3.23 |
| Solyc12g027550.1.1 | Tomato | extracellular | 3.17 | 2.78 |
| Solyc12g038080.1.1 | Tomato | nucleus | 3.17 | 2.7 |
| Solyc10g018840.1.1 | Tomato | mitochondrion | 3.17 | 2.33 |
| Solyc05g041230.1.1 | Tomato | mitochondrion, plastid | 3.17 | 2.04 |
| Solyc09g016930.1.1 | Tomato | mitochondrion | 3.17 | 1.52 |
| Solyc01g011480.1.1 | Tomato | cytosol, nucleus, plastid | 0.0 | 0.0 |
| Solyc11g045260.1.1 | Tomato | endoplasmic reticulum, golgi | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.670 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009521 |
| GO:GO:0009579 | GO:GO:0009767 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | UniProt:K4D1H3 | PFAM:PF00421 |
| InterPro:PS_II_antenna-like_sf | InterPro:PS_antenna-like | PANTHER:PTHR33180 | PANTHER:PTHR33180:SF4 | SUPFAM:SSF161077 | EnsemblPlantsGene:Solyc10g061830.1 |
| EnsemblPlants:Solyc10g061830.1.1 | TMHMM:TMhelix | UniParc:UPI00027695FD | : | : | : |
Description
No Description!
Coordinates
chr10:+:22462600..22463606
Molecular Weight (calculated)
7199.6 Da
IEP (calculated)
4.148
GRAVY (calculated)
0.411
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MAYLSYSLGA LAVFGFIACC FVWFNNTAYP SEFYGPTGPE ASQPQEFTFL VRDQRLLYIY LIP
001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN
Arabidopsis Description
PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.