Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g066110.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00280.1 | Solyc11g066110.1.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g044250.1.1 | Tomato | cytosol, golgi, vacuole | 12.94 | 15.07 |
| ATCG00280.1 | Thale cress | mitochondrion | 68.24 | 12.26 |
| Solyc12g038080.1.1 | Tomato | nucleus | 10.59 | 12.16 |
| HORVU2Hr1G062030.1 | Barley | endoplasmic reticulum, golgi, vacuole | 28.24 | 11.21 |
| Solyc10g017940.1.1 | Tomato | plastid | 22.35 | 9.5 |
| Solyc10g018840.1.1 | Tomato | mitochondrion | 9.41 | 9.3 |
| Solyc05g041230.1.1 | Tomato | mitochondrion, plastid | 10.59 | 9.18 |
| Solyc07g009000.1.1 | Tomato | cytosol, plasma membrane, plastid | 10.59 | 7.26 |
| Solyc11g045260.1.1 | Tomato | endoplasmic reticulum, golgi | 9.41 | 6.3 |
| Solyc09g016930.1.1 | Tomato | mitochondrion | 9.41 | 6.06 |
| CDY29458 | Canola | endoplasmic reticulum, golgi, plasma membrane | 38.82 | 5.21 |
| CDY29457 | Canola | endoplasmic reticulum, golgi, plasma membrane | 38.82 | 5.21 |
| CDX99953 | Canola | plastid | 38.82 | 5.21 |
| CDY39486 | Canola | endoplasmic reticulum, golgi, mitochondrion | 38.82 | 5.16 |
| Solyc12g027550.1.1 | Tomato | extracellular | 3.53 | 4.17 |
| Solyc01g056470.1.1 | Tomato | golgi, plasma membrane | 5.88 | 2.73 |
| Solyc10g047410.1.1 | Tomato | nucleus | 3.53 | 1.01 |
| Solyc10g061830.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.670 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009521 |
| GO:GO:0009579 | GO:GO:0009767 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | UniProt:K4ATY3 | InterPro:PS_II_antenna-like_sf |
| InterPro:PS_antenna-like | PANTHER:PTHR33180 | SUPFAM:SSF161077 | EnsemblPlantsGene:Solyc01g011480.1 | EnsemblPlants:Solyc01g011480.1.1 | UniParc:UPI00027620D0 |
Description
No Description!
Coordinates
chr1:-:9384328..9384585
Molecular Weight (calculated)
9614.6 Da
IEP (calculated)
4.991
GRAVY (calculated)
-0.192
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MLCSPTGEVI FEGETKRFWD LCSPWLEPLR GTNGLDLSRL KQDIQLWQER RSVEYMTHSP LGSLNFVGSV VTGSMQSIMS HLEVG
001: MIFFLSICFC SNLRANNRVS PSSCQITRTN RSWALPVSFK VEKFQLQRGR RRRGSPCFGE SEGLVKNGIG DADGIIIVDH GSRRRESNLM LEEFVKMFKE
101: KTGYPIVEPA HMELAEPSIK DAFSLCVQQG AKRVVVSPFF LFPGRHWHTD IPSLTADAAK EFSGISYLIT APLGPHNLLL DVVNDRIQHC LSHVEGDADE
201: CLVCAGTNKC KLYNSS
101: KTGYPIVEPA HMELAEPSIK DAFSLCVQQG AKRVVVSPFF LFPGRHWHTD IPSLTADAAK EFSGISYLIT APLGPHNLLL DVVNDRIQHC LSHVEGDADE
201: CLVCAGTNKC KLYNSS
Arabidopsis Description
SIRBSirohydrochlorin ferrochelatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84JH7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.