Factsheet for Solyc10g018840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	44.19	38.78
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	53.49	37.1
Solyc12g038080.1.1	Tomato	nucleus	30.23	35.14
KRH29413	Soybean	cytosol, plastid, vacuole	51.16	32.59
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	43.02	29.13
OQU80575	Sorghum	extracellular, golgi, mitochondrion	25.58	22.68
Solyc09g016930.1.1	Tomato	mitochondrion	30.23	19.7
Solyc01g011480.1.1	Tomato	cytosol, nucleus, plastid	9.3	9.41
Solyc12g027550.1.1	Tomato	extracellular	4.65	5.56
Solyc10g017940.1.1	Tomato	plastid	8.14	3.5
Solyc10g061830.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	2.33	3.17
ATCG00280.1	Thale cress	mitochondrion	16.28	2.96
Solyc01g044250.1.1	Tomato	cytosol, golgi, vacuole	2.33	2.74
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	4.65	2.19
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	15.12	2.05
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	15.12	2.05
CDX99953	Canola	plastid	15.12	2.05
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	15.12	2.03
Solyc10g047410.1.1	Tomato	nucleus	4.65	1.34

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009521	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	UniProt:K4CZ05	PFAM:PF00421	InterPro:PS_II_antenna-like_sf
InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077	EnsemblPlantsGene:Solyc10g018840.1	EnsemblPlants:Solyc10g018840.1.1
UniParc:UPI000276C99B	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:10736717..10737059

Molecular Weight (calculated)

9716.6 Da

IEP (calculated)

10.100

GRAVY (calculated)

-0.307

Length

86 amino acids

Sequence
(BLAST)

1: MRESRSLAGR DQESTGFAWW AGNARQLNLS GKLLGAHVAH AGLIVFWARA MNLFEVAYEV TRLKGEEEKP TFWILEFSPQ PRLGGR

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.