CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KRH24811	AT2G28800.1	15988575
ATCG00280.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041230.1.1	Tomato	mitochondrion, plastid	45.93	63.27
Solyc11g045260.1.1	Tomato	endoplasmic reticulum, golgi	51.11	54.33
Solyc10g018840.1.1	Tomato	mitochondrion	32.59	51.16
Solyc07g009000.1.1	Tomato	cytosol, plasma membrane, plastid	42.22	45.97
OQU80575	Sorghum	extracellular, golgi, mitochondrion	20.74	28.87
KRH57644	Soybean	extracellular, golgi	5.93	12.5
KRG92989	Soybean	plastid	7.41	6.71
ATCG00280.1	Thale cress	mitochondrion	12.59	3.59
CDX99953	Canola	plastid	11.11	2.37
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	11.11	2.37
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	11.11	2.37
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	11.11	2.34
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	2.22	1.67

Protein Annotations

MapMan:35.1	UniProt:A0A0R0HPZ8	EMBL:ACUP02006800	EnsemblPlantsGene:GLYMA_11G114700	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	EnsemblPlants:KRH29413	ProteinID:KRH29413	ProteinID:KRH29413.1
PFAM:PF00421	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	SUPFAM:SSF161077
TMHMM:TMhelix	UniParc:UPI0006ED5CAF	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:8753784..8755152

Molecular Weight (calculated)

14551.0 Da

IEP (calculated)

10.418

GRAVY (calculated)

0.256

Length

135 amino acids

Sequence
(BLAST)

001: MPVSRTKLKN GNPKMVSVPK QALTGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EMAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGIIKS KFPSK

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.