Factsheet for Zm00001d000260_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plastid: 18453340
plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
plastid: 22833285
plastid: 23198870

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008625_P001
Zm00001d039852_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	Zm00001d008625_P001	AT2G28800.1	15988575
ATCG00280.1	Zm00001d039852_P001	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA34013	Rice	plasma membrane	99.72	99.72
AGP50740	Barley	plastid	99.15	99.15
PGSC0003DMT400004386	Potato	mitochondrion	56.66	85.47
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	5.1	11.61
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	4.82	10.97
ATCG00280.1	Thale cress	mitochondrion	7.37	5.5
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	2.83	5.46
GRMZM5G856777_P01	Maize	plastid	7.08	5.29
CDX99953	Canola	plastid	6.52	3.63
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	6.52	3.63
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	6.52	3.63
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	6.52	3.59
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	1.7	3.33
Solyc10g047410.1.1	Tomato	nucleus	2.55	3.02

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	UniProt:A0A1X7YHF7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538
GO:GO:0019684	GO:GO:0042651	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854
HAMAP:MF_01383	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_PsbD/D2	PANTHER:PTHR33149
PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TIGRFAMs:TIGR01152	TMHMM:TMhelix
UniParc:UPI00003A92DC	EnsemblPlantsGene:Zm00001d000260	EnsemblPlants:Zm00001d000260_P001	EnsemblPlants:Zm00001d000260_T001	SEG:seg	:

Description

Photosystem II D2 protein

Coordinates

chrB73V4_ctg134:+:5196..6257

Molecular Weight (calculated)

39561.6 Da

IEP (calculated)

5.293

GRAVY (calculated)

0.364

Length

353 amino acids

Sequence
(BLAST)

001: MTIAVGRVTK EENDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.