Factsheet for PGSC0003DMT400004386

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	PGSC0003DMT400001063	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G024740.1	Barley	mitochondrion, vacuole	34.62	77.88
HORVU0Hr1G029670.1	Barley	mitochondrion, vacuole	34.62	77.88
HORVU5Hr1G004580.3	Barley	cytosol, plasma membrane, vacuole	81.62	72.35
CAA34013	Rice	plasma membrane	85.47	56.66
Zm00001d000260_P001	Maize	plastid	85.47	56.66
AGP50740	Barley	plastid	84.62	56.09
TraesCS3D01G523300.1	Wheat	extracellular, plasma membrane, vacuole	9.4	14.19
TraesCS5D01G007900.1	Wheat	extracellular, plasma membrane, vacuole	8.97	13.55
ATCG00280.1	Thale cress	mitochondrion	10.68	5.29
Solyc01g056470.1.1	Tomato	golgi, plasma membrane	3.42	4.37
CDX99953	Canola	plastid	9.4	3.47
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	9.4	3.47
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	9.4	3.47
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	9.4	3.44
Solyc10g047410.1.1	Tomato	nucleus	4.27	3.36
VIT_00s0396g00010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	2.56	3.33

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854	UniProt:M0ZNC6	PFAM:PF00124
EnsemblPlantsGene:PGSC0003DMG400001746	PGSC:PGSC0003DMG400001746	EnsemblPlants:PGSC0003DMT400004386	PRINTS:PR00256	ScanProsite:PS00244	PANTHER:PTHR33149
PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI000295909E
SEG:seg	:	:	:	:	:

Description

Photosystem II D2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001746]

Coordinates

chr9:-:6240353..6241057

Molecular Weight (calculated)

25804.1 Da

IEP (calculated)

5.472

GRAVY (calculated)

0.540

Length

234 amino acids

Sequence
(BLAST)

001: MTIAIGKFTK DENDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFAVGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FGLIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NDLS

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.