CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
vacuole 4
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00280.1	KXG31875	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33956	Sorghum	cytosol, golgi, plastid	13.39	65.38
KXG38767	Sorghum	plastid	12.86	60.49
CAA34014	Rice	extracellular	72.97	58.77
GRMZM5G856777_P01	Maize	plastid	72.18	58.14
ATCG00280.1	Thale cress	mitochondrion	70.87	57.08
CDX99953	Canola	plastid	60.1	36.12
CDY29457	Canola	endoplasmic reticulum, golgi, plasma membrane	60.1	36.12
CDY29458	Canola	endoplasmic reticulum, golgi, plasma membrane	60.1	36.12
CDY39486	Canola	endoplasmic reticulum, golgi, mitochondrion	60.1	35.78
OQU80575	Sorghum	extracellular, golgi, mitochondrion	1.57	6.19

Protein Annotations

Gene3D:1.10.10.670	MapMan:35.1	UniProt:A0A1B6QN19	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	EnsemblPlants:KXG39316	ProteinID:KXG39316	ProteinID:KXG39316.2	PFAM:PF00421
InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like	PANTHER:PTHR33180	PANTHER:PTHR33180:SF4	EnsemblPlantsGene:SORBI_3001G299900	SUPFAM:SSF161077
TMHMM:TMhelix	UniParc:UPI000B8BAA0F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:58110680..58112132

Molecular Weight (calculated)

43229.6 Da

IEP (calculated)

7.176

GRAVY (calculated)

0.259

Length

381 amino acids

Sequence
(BLAST)

001: MKILYSLRWF YHVEMLFNGT FILASHDQET TNFAWWARNA DLSICPAGAM NLFEVAHFIP EKPMYEQGLI LLPHLAIEVL GFSGIYHTLL GPETLEESFP
101: FFGYVWKDRN KMTIILGVHL ILFGLGAFLL VLKALYFGGV YICGPRGDVR KNTNLTLSPG VIFGYLLKSP FGGEGWIVSV DDLQDIIGGI IWHILTKPFA
201: WARHPFVWFG EAYLSYRLGA LSGFGFIACC FVWFNSTAYP SEFYEPIEPE SFSSSSTFLI RDQHLGANVG SSQGPTGLGK YLMLKIDIQP WQERRSTKYM
301: THAPLGSLNS MGGIATEINA VNYIPRLYDP LSPRRFFFFV GHLWHARRAW AIVVGFEKGI NCDLEPVLYM SPLTKIFLFI H

Best Arabidopsis Sequence Match ( ATCG00280.1 )
(BLAST)

001: MKTLYSLRRF YHVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG
101: PGGEVIDTFP YFVSGVLHLI SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGV GAFLLVFKAL YFGGVYDTWA PGGGDVRKIT
201: NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLAALS VCGFIACCFV WFNNTAYPSE
301: FYGPTGPEAS QAQAFTFLVR DQRLGANVGS AQGPTGLGKY LMRSPTGEVI FGGETMRFWD LRAPWLEPLR GPNGLDLSRL KKDIQPWQER RSAEYMTHAP
401: LGSLNSVGGV ATEINAVNYV SPRSWLSTSH FVLGFFLFVG HLWHAGRARA AAAGFEKGID RDFEPVLSMT PLN

Arabidopsis Description

PSBCPhotosystem II CP43 reaction center protein [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.