Factsheet for Solyc11g056340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g010610.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g056340.1.1
Solyc11g066110.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	Solyc11g066110.1.1	AT2G28800.1	15988575
ATCG00020.1	Solyc01g008950.2.1	AT2G41090.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc01g008950.2.1	AT2G41100.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc01g008950.2.1	AT5G21274.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc02g010610.1.1	ATCG00020.1	15988575
ATCG00020.1	Solyc11g056340.1.1	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g010610.1.1	Tomato	cytosol	85.71	85.71
Solyc03g013500.1.1	Tomato	extracellular, vacuole	71.43	53.57
Solyc11g013780.1.1	Tomato	cytosol, plastid	41.27	36.62
Solyc11g030830.1.1	Tomato	cytosol	52.38	35.87
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	84.13	26.9
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	30.16	22.89
PGSC0003DMT400094795	Potato	cytosol, extracellular, peroxisome	47.62	21.43
KRH17937	Soybean	mitochondrion, nucleus	87.3	20.3
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	88.89	19.72
Os04t0473150-00	Rice	cytosol, peroxisome	41.27	19.26
HORVU5Hr1G004630.2	Barley	plasma membrane	88.89	17.02
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	92.06	16.43
Solyc01g097530.1.1	Tomato	plasma membrane	25.4	14.95
Solyc02g011990.1.1	Tomato	plastid	39.68	9.58
Zm00001d034153_P001	Maize	cytosol	12.7	3.08
VIT_08s0058g01080.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	1.59	2.56
KRH57629	Soybean	cytosol	3.17	1.82
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	0.0	0.0
Solyc02g021290.1.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	0.0	0.0
TraesCS5A01G103300.1	Wheat	extracellular	0.0	0.0
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	UniProt:K4D8U5	PFAM:PF00124	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11
InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc11g056340.1	EnsemblPlants:Solyc11g056340.1.1	TMHMM:TMhelix
UniParc:UPI000276AA9C	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:45374379..45374570

Molecular Weight (calculated)

6921.2 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.078

Length

63 amino acids

Sequence
(BLAST)

1: MIVFQAEHNI LMHPFHILGL AGVKGGSLFS AMHASLVTSS LIRESTENES ANEGYRFGQE EET

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.