Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G017870.1 | Barley | extracellular, vacuole | 76.47 | 52.0 |
| Solyc01g097530.1.1 | Tomato | plasma membrane | 70.59 | 33.64 |
| TraesCS5A01G420900.1 | Wheat | vacuole | 74.51 | 16.74 |
| Solyc02g011990.1.1 | Tomato | plastid | 66.67 | 13.03 |
| Solyc01g048590.1.1 | Tomato | extracellular, plasma membrane | 0.0 | 0.0 |
| Solyc02g010610.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc03g013500.1.1 | Tomato | extracellular, vacuole | 0.0 | 0.0 |
| Solyc05g016120.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
| Solyc11g013780.1.1 | Tomato | cytosol, plastid | 0.0 | 0.0 |
| Solyc11g030830.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc11g056340.1.1 | Tomato | endoplasmic reticulum | 0.0 | 0.0 |
| Solyc12g039030.1.1 | Tomato | endoplasmic reticulum | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0019684 | GO:GO:0045156 | InterPro:IPR036854 |
| UniProt:K4B4X9 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF11 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | SUPFAM:SSF81483 |
| EnsemblPlantsGene:Solyc02g021290.1 | EnsemblPlants:Solyc02g021290.1.1 | UniParc:UPI0002768810 | : | : | : |
Description
No Description!
Coordinates
chr2:-:22404888..22405043
Molecular Weight (calculated)
5703.8 Da
IEP (calculated)
3.884
GRAVY (calculated)
0.145
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MAFNLNGFNF NQSVVDSQGR VINTWADIIN RANLGMEVMQ DDLTLFQALI G
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Arabidopsis Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.