Factsheet for Solyc02g010610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g010610.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g056340.1.1
Solyc11g066110.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	Solyc11g066110.1.1	AT2G28800.1	15988575
ATCG00020.1	Solyc01g008950.2.1	AT2G41090.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT2G41090.1	17360592
ATCG00020.1	Solyc01g008950.2.1	AT2G41100.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT2G41100.1	17360592
ATCG00020.1	Solyc01g008950.2.1	AT5G21274.1	17360592
ATCG00020.1	Solyc10g077010.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc10g081170.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc11g072240.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc12g099990.1.1	AT5G21274.1	17360592
ATCG00020.1	Solyc02g010610.1.1	ATCG00020.1	15988575
ATCG00020.1	Solyc11g056340.1.1	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	85.71	85.71
Solyc03g013500.1.1	Tomato	extracellular, vacuole	60.32	45.24
Solyc11g013780.1.1	Tomato	cytosol, plastid	36.51	32.39
Solyc11g030830.1.1	Tomato	cytosol	46.03	31.52
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	74.6	23.86
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	26.98	20.48
KRH17937	Soybean	mitochondrion, nucleus	76.19	17.71
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	77.78	17.25
PGSC0003DMT400094795	Potato	cytosol, extracellular, peroxisome	38.1	17.14
HORVU5Hr1G004630.2	Barley	plasma membrane	77.78	14.89
Os04t0473150-00	Rice	cytosol, peroxisome	31.75	14.81
Solyc01g097530.1.1	Tomato	plasma membrane	23.81	14.02
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	77.78	13.88
Solyc02g011990.1.1	Tomato	plastid	34.92	8.43
Zm00001d034153_P001	Maize	cytosol	12.7	3.08
VIT_08s0058g01080.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	1.59	2.56
KRH57629	Soybean	cytosol	3.17	1.82
Solyc02g021290.1.1	Tomato	cytosol, nucleus	0.0	0.0
TraesCS5A01G103300.1	Wheat	extracellular	0.0	0.0
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	0.0	0.0
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	0.0	0.0
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	UniProt:K4B4G2	PFAM:PF00124	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11
InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc02g010610.1	EnsemblPlants:Solyc02g010610.1.1	TMHMM:TMhelix
UniParc:UPI0002767EA9	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:12930183..12930374

Molecular Weight (calculated)

7105.6 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.129

Length

63 amino acids

Sequence
(BLAST)

1: MIVFQPEHNI HMHPFHILGL AGVKGGSLFY AMHASLVTFS LVRESTENES ANEGYKFVQK EKT

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.