Factsheet for Solyc03g013500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	53.57	71.43
Solyc02g010610.1.1	Tomato	cytosol	45.24	60.32
Solyc11g030830.1.1	Tomato	cytosol	35.71	32.61
Solyc11g013780.1.1	Tomato	cytosol, plastid	26.19	30.99
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	21.43	21.69
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	51.19	18.94
TraesCS4B01G159100.1	Wheat	extracellular, golgi	47.62	17.62
TraesCS5D01G008300.1	Wheat	plasma membrane	53.57	14.02
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	58.33	13.88
Zm00001d000417_P001	Maize	plastid	58.33	13.88
TraesCS1D01G179900.1	Wheat	plastid	58.33	13.88
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	58.33	13.88
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	58.33	13.88
Solyc01g097530.1.1	Tomato	plasma membrane	13.1	10.28
Solyc02g011990.1.1	Tomato	plastid	29.76	9.58
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	2.38	3.77
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	4.76	1.72
Solyc02g021290.1.1	Tomato	cytosol, nucleus	0.0	0.0
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc03g013500.1.1	EnsemblPlantsGene:Solyc03g013500.1	Gene3D:1.20.85.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684
GO:GO:0045156	InterPro:IPR036854	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11
PFAM:PF00124	SUPFAM:SSF81483	UniParc:UPI000276853B	UniProt:K4BES1	MapMan:35.1	:

Description

No Description!

Coordinates

chr3:-:44404226..44404662

Molecular Weight (calculated)

9525.7 Da

IEP (calculated)

5.531

GRAVY (calculated)

0.394

Length

84 amino acids

Sequence
(BLAST)

1: MEITDMLCRR ASLLMSRFAQ LGTSNFMILF LAEYDILMHP FHIIGLACVK GSSLLSVMHA SLVTSSFIRE SIENEFDNEG YRFG

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.